Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq52 233 4e-59 seq71 176 1e-41 >seq52 Length=149364 Score = 233 bits (258), Expect = 4e-59 Identities = 255/335 (76%), Gaps = 13/335 (4%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || || ||||| | | |||||||||||| || ||||||||||||||| Sbjct 116769 TTTACAACCCATAGGCCTTCATCCTT-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 116826 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 116827 TTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 116886 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| |||| | |||||||||||| |||||||||| Sbjct 116887 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCATTGCCTTGGTGAGCAATTACCTCAC 116946 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| | | | || ||||| | ||| | || | || Sbjct 116947 CAACTAGCTAATCAGCCGCAAGCCCATCTCTTGGCGATTTTC------ATCATTTAACTT 117000 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 || | ||| |||| ||||||||| ||||||| | ||| |||| | | | ||| Sbjct 117001 CT-CAGTA----TTATGAGGTATTAGCCATCGTTTCCAATGGTTGTCCCTCTCCAAAAGG 117055 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || ||| || | ||||||||||||||||| ||| Sbjct 117056 TAGGTTCTTACGTGTTACTCACCCGTCCGCCACTC 117090 >seq71 Length=95661 Score = 176 bits (194), Expect = 1e-41 Identities = 152/187 (81%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||||| || |||||||||||||| |||||| ||||||| ||||| ||||||| Sbjct 72199 TCACCCACGCGAT-TTAGCTGGATCAGGCTTGCGCCCAGTGTCCAAGATTCCTCACTGCT 72141 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 ||| | || | | |||||| |||||||||||| |||||||| | ||||||||||||||| Sbjct 72140 GCCGCTCGAAAGCGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCATCCTCTCAGAT 72081 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGG 203 ||| || ||||| ||| ||||| || ||||| |||||||| ||||||| || | | Sbjct 72080 CAGCTAAGGATCTTCGGCTTGGGAGGCTTTTACCCTACCAACTACCTAATCCTACGCAAG 72021 Query 204 CTCATCT 210 ||||||| Sbjct 72020 CTCATCT 72014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071996773280