Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq52 316 7e-84 seq71 116 1e-23 >seq52 Length=149364 Score = 316 bits (350), Expect = 7e-84 Identities = 356/468 (76%), Gaps = 19/468 (4%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | |||| || ||| ||||| Sbjct 113261 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCCGAGTTCGACTGGTATTTCA 113320 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 || ||| ||||| |||||| | | |||||||| | || ||||||| ||| ||| || Sbjct 113321 CCGCTAACCACAACTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTTCACTTGG 113380 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | | |||| |||||| |||| ||||| |||||||| | ||||||||| || Sbjct 113381 TGTCACCCAAGCTTCATCCTGGTCATGGTTAGATCACCCGGGTTCGGGTCTAGAAAAAAT 113440 Query 316 CACT-CATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT---TAAC 371 ||| ||| |||||||||| |||| ||||||||| ||||| || | ||| | |||| Sbjct 113441 GACTTCAT-CGCCCTATTCAGACTTGCTTTCGCTTCGGCT-CCGGATACGTTTCCTTAAC 113498 Query 372 CTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTAC 431 || || || | || |||| |||||||||||||| |||||||| |||| |||| Sbjct 113499 CTTGCCACGTTTT-CTAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GTAC 113553 Query 432 CTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTC 491 |||| | || |||| || | |||| |||| | ||||||| || ||||||||||| Sbjct 113554 -TAAA--GTAC-----CTCCCACTGGTTGTCGGCATAGGGTTTCATGTTCTATTTCACTC 113605 Query 492 CCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGG 551 ||| ||||||| ||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 113606 CCCTACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTATTTCGCTATCGGTCACCTAGG 113665 Query 552 AGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||| |||| |||||||| | |||||||||| |||||| Sbjct 113666 AGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTTCA 113713 >seq71 Length=95661 Score = 116 bits (128), Expect = 1e-23 Identities = 142/190 (75%), Gaps = 9/190 (5%) Strand=Plus/Plus Query 389 ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGC 448 |||||| | | |||| | ||||||| |||||||||| | ||||| | | ||| Sbjct 10045 ACTCGCTGACCCATTATGCAAAAGGTACGCCGTCACTTTT---CTAAA--GAAA---AGC 10096 Query 449 TCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTT 508 | |||| | ||||| ||| ||||||||| ||||||||| ||| ||| ||||| Sbjct 10097 TTCGACTGCTTGTAAGCATTCAGTTTCAGGTTCTATTTCACACCCTATTTAGGGGACTTT 10156 Query 509 T-CACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAAC 567 | ||||||||||||||||||||||| | |||||| ||| | | |||||||||||| Sbjct 10157 TTCACCTTTCCCTCACGGTACTTGTTCACTATCGATCAGAAGAAAATATTTAGGCTTAGA 10216 Query 568 GGGTGGTCCC 577 |||||||||| Sbjct 10217 GGGTGGTCCC 10226 Score = 116 bits (128), Expect = 1e-23 Identities = 142/190 (75%), Gaps = 9/190 (5%) Strand=Plus/Plus Query 389 ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGC 448 |||||| | | |||| | ||||||| |||||||||| | ||||| | | ||| Sbjct 85059 ACTCGCTGACCCATTATGCAAAAGGTACGCCGTCACTTTT---CTAAA--GAAA---AGC 85110 Query 449 TCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTT 508 | |||| | ||||| ||| ||||||||| ||||||||| ||| ||| ||||| Sbjct 85111 TTCGACTGCTTGTAAGCATTCAGTTTCAGGTTCTATTTCACACCCTATTTAGGGGACTTT 85170 Query 509 T-CACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAAC 567 | ||||||||||||||||||||||| | |||||| ||| | | |||||||||||| Sbjct 85171 TTCACCTTTCCCTCACGGTACTTGTTCACTATCGATCAGAAGAAAATATTTAGGCTTAGA 85230 Query 568 GGGTGGTCCC 577 |||||||||| Sbjct 85231 GGGTGGTCCC 85240 Score = 104 bits (114), Expect = 8e-20 Identities = 127/172 (74%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||| ||| |||||| || |||||||||| | ||| | ||||||| |||| Sbjct 9735 ACGCTCTACCTCAATAGATTTCGCAGAAAACCAGCTATTTCCAAGCTCGATTGGCTTTTC 9794 Query 195 ACCCC-TATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGC 253 ||||| || |||| ||||||||| || | || | ||||||||||||||||| Sbjct 9795 ACCCCATAGTCACAAGTCATCCCCATCTATTGCCACAGATGTGGGTTCGGTCCTCCAAAA 9854 Query 254 GGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 || ||| | |||||||||| |||| |||||| ||| | |||||||| Sbjct 9855 CGTGTTATCATTTTTTCAACCTGCTCATGACTAGATCGCTTGGTTTCGGGTC 9906 Score = 104 bits (114), Expect = 8e-20 Identities = 127/172 (74%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||| ||| |||||| || |||||||||| | ||| | ||||||| |||| Sbjct 84749 ACGCTCTACCTCAATAGATTTCGCAGAAAACCAGCTATTTCCAAGCTCGATTGGCTTTTC 84808 Query 195 ACCCC-TATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGC 253 ||||| || |||| ||||||||| || | || | ||||||||||||||||| Sbjct 84809 ACCCCATAGTCACAAGTCATCCCCATCTATTGCCACAGATGTGGGTTCGGTCCTCCAAAA 84868 Query 254 GGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 || ||| | |||||||||| |||| |||||| ||| | |||||||| Sbjct 84869 CGTGTTATCATTTTTTCAACCTGCTCATGACTAGATCGCTTGGTTTCGGGTC 84920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817594529024