Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micractinium_20conductrix_20[genbank_20GCA_5F002245815.1_202017-08- 10] 301 sequences; 61,020,757 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq71 152 2e-34 seq52 140 1e-30 >seq71 Length=95661 Score = 152 bits (168), Expect = 2e-34 Identities = 178/239 (74%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 ||||||||||| ||||||| | | | | |||| || ||||||| ||||| | Sbjct 8324 CTCCCACCTATTCTACACATTCAGACTCTTTTTTCAATGTTAAACTATAGTAAAGGTGCA 8383 Query 301 G-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||| |||| || ||| ||||||| || | | ||||||||| | Sbjct 8384 TAGGGTCTTACCGTCTACTTTCGGGAACTCCGCATCTTCACGGAGAATTCAATTTCACTG 8443 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || | |||||||| ||| |||||| || |||||| ||||||||||||||||||| Sbjct 8444 AGATCATGTTGGAGACAGCGGGGAAGTCGTGACACCATTCATGCAGGTCGGAACTTACCC 8503 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 ||||||||||||||||||||||||| || | |||||| ||||||||||||||| ||| Sbjct 8504 GACAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGCCTT 8562 Score = 152 bits (168), Expect = 2e-34 Identities = 178/239 (74%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 ||||||||||| ||||||| | | | | |||| || ||||||| ||||| | Sbjct 83338 CTCCCACCTATTCTACACATTCAGACTCTTTTTTCAATGTTAAACTATAGTAAAGGTGCA 83397 Query 301 G-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||| |||| || ||| ||||||| || | | ||||||||| | Sbjct 83398 TAGGGTCTTACCGTCTACTTTCGGGAACTCCGCATCTTCACGGAGAATTCAATTTCACTG 83457 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || | |||||||| ||| |||||| || |||||| ||||||||||||||||||| Sbjct 83458 AGATCATGTTGGAGACAGCGGGGAAGTCGTGACACCATTCATGCAGGTCGGAACTTACCC 83517 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 ||||||||||||||||||||||||| || | |||||| ||||||||||||||| ||| Sbjct 83518 GACAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGCCTT 83576 >seq52 Length=149364 Score = 140 bits (154), Expect = 1e-30 Identities = 118/144 (82%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| |||||||| | |||||| || Sbjct 110219 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTACACTCTACGGCTGATTTCC 110278 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| | |||||||||| |||| ||| || |||||||||| Sbjct 110279 GTCCAGCCTGAGGGAACCTTTGCACACCTCCGTTACCTTTTAGGA-GGTGACCGCCCCAG 110337 Query 121 TTAAACTACCCACCAGGCACTGTC 144 | ||||| |||||| | |||||| Sbjct 110338 TCAAACTGCCCACCTGAAACTGTC 110361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702394875776