Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq19 365 1e-98 seq18 306 1e-80 >seq19 Length=72585 Score = 365 bits (404), Expect = 1e-98 Identities = 378/486 (78%), Gaps = 18/486 (4%) Strand=Plus/Plus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 5850 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGTATGTGGTTTAATTCGA 5909 Query 75 AGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTT 134 ||||| ||||||||||||||| |||| ||| | | | ||| || ||||| Sbjct 5910 TGCAACACGAAGAACCTTACCAGGGTTTGAAATCATTTCAAAACTC-CTTGAAAGAGGAG 5968 Query 135 TCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGA 194 | ||||| |||| | ||||||||| ||||||| |||||||||||||||| |||| | Sbjct 5969 CCTCCTTC--GGGATGAAATGACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTTGTGAAA 6026 Query 195 TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGG 254 ||| | |||||||| || |||||||||||||| | | ||||| ||| | ||| Sbjct 6027 TGTCGAGTTAAGTCTCGTAACGAGCGCAACCCATGTCTCTTGTTGC--TCACTGAGT--- 6081 Query 255 GCACTCTAAG-TTGACTGCCGGTGACAAAC--CGGAGGAAGGTGGGGACGACGTCAAATC 311 || |||| ||||||| ||| ||| |||||||||||| ||| || ||||| || Sbjct 6082 GC---TTAAGAGAGACTGCC---GACCAACATCGGAGGAAGGTGTGGATGATGTCAAGTC 6135 Query 312 ATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCG 371 | ||||||||||| |||||||||||||| ||||||||| |||| | || ||| Sbjct 6136 AGCATGCCCCTTACATCCTGGGCTACACACGTACTACAATGGTAGGGACAATGAGCTGCG 6195 Query 372 AAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAAC 431 | | |||| | | ||| |||| || ||| ||||||||||||||||| |||||||| Sbjct 6196 ATCCTGCGAAGGCTAGCCAATCTCAAAAACCCTATCTCAGTTCGGATTGTACTCTGCAAC 6255 Query 432 TCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTGAATACG 490 |||| || |||||| |||||||||||||||||| | ||||| || | ||||||||||| Sbjct 6256 TCGAGTACATGAAGGTGGAATCGCTAGTAATCGCTGGTCAGCTATACAGCGGTGAATACG 6315 Query 491 TTCCCG 496 |||||| Sbjct 6316 TTCCCG 6321 Score = 365 bits (404), Expect = 1e-98 Identities = 378/486 (78%), Gaps = 18/486 (4%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 41293 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGTATGTGGTTTAATTCGA 41234 Query 75 AGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTT 134 ||||| ||||||||||||||| |||| ||| | | | ||| || ||||| Sbjct 41233 TGCAACACGAAGAACCTTACCAGGGTTTGAAATCATTTCAAAACTC-CTTGAAAGAGGAG 41175 Query 135 TCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGA 194 | ||||| |||| | ||||||||| ||||||| |||||||||||||||| |||| | Sbjct 41174 CCTCCTTC--GGGATGAAATGACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTTGTGAAA 41117 Query 195 TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGG 254 ||| | |||||||| || |||||||||||||| | | ||||| ||| | ||| Sbjct 41116 TGTCGAGTTAAGTCTCGTAACGAGCGCAACCCATGTCTCTTGTTGC--TCACTGAGT--- 41062 Query 255 GCACTCTAAG-TTGACTGCCGGTGACAAAC--CGGAGGAAGGTGGGGACGACGTCAAATC 311 || |||| ||||||| ||| ||| |||||||||||| ||| || ||||| || Sbjct 41061 GC---TTAAGAGAGACTGCC---GACCAACATCGGAGGAAGGTGTGGATGATGTCAAGTC 41008 Query 312 ATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCG 371 | ||||||||||| |||||||||||||| ||||||||| |||| | || ||| Sbjct 41007 AGCATGCCCCTTACATCCTGGGCTACACACGTACTACAATGGTAGGGACAATGAGCTGCG 40948 Query 372 AAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAAC 431 | | |||| | | ||| |||| || ||| ||||||||||||||||| |||||||| Sbjct 40947 ATCCTGCGAAGGCTAGCCAATCTCAAAAACCCTATCTCAGTTCGGATTGTACTCTGCAAC 40888 Query 432 TCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTGAATACG 490 |||| || |||||| |||||||||||||||||| | ||||| || | ||||||||||| Sbjct 40887 TCGAGTACATGAAGGTGGAATCGCTAGTAATCGCTGGTCAGCTATACAGCGGTGAATACG 40828 Query 491 TTCCCG 496 |||||| Sbjct 40827 TTCCCG 40822 >seq18 Length=47425 Score = 306 bits (338), Expect = 1e-80 Identities = 361/487 (74%), Gaps = 15/487 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | ||| | |||||||||||||||| | ||||||||||||||||| Sbjct 5253 TACGGCCGCAAGGCTAAAATTTAAAGGAATTGACGGGGGCTTACACAAGCGGTGGAGCAT 5312 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||| ||||||| ||||||||||||| |||| || | || | Sbjct 5313 GTGGTTTAATTCGAAACAACGCGCAGAACCTTACCAATCCTTGCAATATACAGAAAACAA 5372 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | | || | ||| || || |||| | | ||||||| ||||||||| Sbjct 5373 TGGTTAT---GCTTTGTATTTTGGTATACAG--------GCGCTGCATGGCTGTCGTCAG 5421 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||| |||||| ||||||||||||||| ||||| ||||||||| | | || Sbjct 5422 TTCGTGGCGTGAGCTGTTGGGTTAAGTCCTAGAACGAACGCAACCCTCTTGATATGTGTA 5481 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| | | | | | |||||| |||||| || ||||||||||| ||| Sbjct 5482 TATTTTTAAAGTATACCTTATCAT---ACTGCCAGTGACATACGGGAGGAAGGTGAGGAT 5538 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| || |||| |||||||| ||||||||||||||||||||||||| | | Sbjct 5539 GACGTCAAGTCCGCATGGCCCTTATGGGTTGGGCTACACACGTGCTACAATGGCGGAAGC 5598 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 ||| || || | | | || | ||||||||| ||| || | ||||| ||||| Sbjct 5599 AAAAGGTGGCAATATGGTGACATGGAGCAAATCCTTAAAAACCGTCGT-AGTTCAGATTG 5657 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 | |||||||||||| | |||||| |||||||||||||||||||||||||||||||||| Sbjct 5658 TTCTCTGCAACTCGAGAACATGAAGATGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 5717 Query 481 GGTGAAT 487 ||||||| Sbjct 5718 GGTGAAT 5724 Score = 306 bits (338), Expect = 1e-80 Identities = 361/487 (74%), Gaps = 15/487 (3%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | ||| | |||||||||||||||| | ||||||||||||||||| Sbjct 31053 TACGGCCGCAAGGCTAAAATTTAAAGGAATTGACGGGGGCTTACACAAGCGGTGGAGCAT 30994 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||| ||||||| ||||||||||||| |||| || | || | Sbjct 30993 GTGGTTTAATTCGAAACAACGCGCAGAACCTTACCAATCCTTGCAATATACAGAAAACAA 30934 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | | || | ||| || || |||| | | ||||||| ||||||||| Sbjct 30933 TGGTTAT---GCTTTGTATTTTGGTATACAG--------GCGCTGCATGGCTGTCGTCAG 30885 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||| |||||| ||||||||||||||| ||||| ||||||||| | | || Sbjct 30884 TTCGTGGCGTGAGCTGTTGGGTTAAGTCCTAGAACGAACGCAACCCTCTTGATATGTGTA 30825 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| | | | | | |||||| |||||| || ||||||||||| ||| Sbjct 30824 TATTTTTAAAGTATACCTTATCAT---ACTGCCAGTGACATACGGGAGGAAGGTGAGGAT 30768 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| || |||| |||||||| ||||||||||||||||||||||||| | | Sbjct 30767 GACGTCAAGTCCGCATGGCCCTTATGGGTTGGGCTACACACGTGCTACAATGGCGGAAGC 30708 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 ||| || || | | | || | ||||||||| ||| || | ||||| ||||| Sbjct 30707 AAAAGGTGGCAATATGGTGACATGGAGCAAATCCTTAAAAACCGTCGT-AGTTCAGATTG 30649 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 | |||||||||||| | |||||| |||||||||||||||||||||||||||||||||| Sbjct 30648 TTCTCTGCAACTCGAGAACATGAAGATGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 30589 Query 481 GGTGAAT 487 ||||||| Sbjct 30588 GGTGAAT 30582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503999714240