Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq8 379 3e-103 seq19 82.4 1e-13 >seq8 Length=1276107 Score = 379 bits (420), Expect = 3e-103 Identities = 251/277 (91%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 13 TTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA 72 |||| |||| || |||| || | |||||||||||||||||||||||| ||||||||||| Sbjct 884657 TTACTCTTGGAGC-ACGGCCAACGGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAA 884599 Query 73 CCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGG 132 |||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||| Sbjct 884598 CCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCTACACTTGGCGAATTCTGCTTCGC 884539 Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 884538 AATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 884479 Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| Sbjct 884478 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCGTCAAATTCCGACA 884419 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||||||||||||||||||| |||||| |||||| Sbjct 884418 AGCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGT 884382 Score = 379 bits (420), Expect = 3e-103 Identities = 251/277 (91%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 13 TTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA 72 |||| |||| || |||| || | |||||||||||||||||||||||| ||||||||||| Sbjct 899839 TTACTCTTGGAGC-ACGGCCAACGGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAA 899781 Query 73 CCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGG 132 |||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||| Sbjct 899780 CCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCTACACTTGGCGAATTCTGCTTCGC 899721 Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899720 AATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 899661 Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| Sbjct 899660 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCGTCAAATTCCGACA 899601 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||||||||||||||||||| |||||| |||||| Sbjct 899600 AGCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGT 899564 Score = 379 bits (420), Expect = 3e-103 Identities = 251/277 (91%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 13 TTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA 72 |||| |||| || |||| || | |||||||||||||||||||||||| ||||||||||| Sbjct 926508 TTACTCTTGGAGC-ACGGCCAACGGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAA 926450 Query 73 CCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGG 132 |||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||| Sbjct 926449 CCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCTACACTTGGCGAATTCTGCTTCGC 926390 Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 926389 AATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 926330 Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| Sbjct 926329 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCGTCAAATTCCGACA 926270 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||||||||||||||||||| |||||| |||||| Sbjct 926269 AGCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGT 926233 >seq19 Length=72585 Score = 82.4 bits (90), Expect = 1e-13 Identities = 129/182 (71%), Gaps = 7/182 (4%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC-CTATTAGTGGGTGAACAA 105 || || |||||||| |||| ||| |||||||||| ||| || || | |||| ||||| Sbjct 9321 ACCAAACTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCGCTTTCTATGGGCGAACAG 9262 Query 106 TCCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 ||||| ||| || | ||| ||| | | ||| || ||||||||||||| | | Sbjct 9261 CCCAACCCTTGGAACGTACTTCCGCTCCAGGATGC---GACGAGCCGACATCGAGGTGCC 9205 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 ||| | ||||| | ||||| ||||| | | |||| ||||||||| ||||||| Sbjct 9204 AAACCTCCCCGTCGATGTGAACTCTTGGGGGAGATTAGCCTGTTATCCCTAGAGTAACTT 9145 Query 223 TT 224 || Sbjct 9144 TT 9143 Score = 82.4 bits (90), Expect = 1e-13 Identities = 129/182 (71%), Gaps = 7/182 (4%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC-CTATTAGTGGGTGAACAA 105 || || |||||||| |||| ||| |||||||||| ||| || || | |||| ||||| Sbjct 37822 ACCAAACTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCGCTTTCTATGGGCGAACAG 37881 Query 106 TCCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 ||||| ||| || | ||| ||| | | ||| || ||||||||||||| | | Sbjct 37882 CCCAACCCTTGGAACGTACTTCCGCTCCAGGATGC---GACGAGCCGACATCGAGGTGCC 37938 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 ||| | ||||| | ||||| ||||| | | |||| ||||||||| ||||||| Sbjct 37939 AAACCTCCCCGTCGATGTGAACTCTTGGGGGAGATTAGCCTGTTATCCCTAGAGTAACTT 37998 Query 223 TT 224 || Sbjct 37999 TT 38000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399837664