Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq19 221 2e-55 seq18 123 5e-26 >seq19 Length=72585 Score = 221 bits (244), Expect = 2e-55 Identities = 185/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| |||| ||||||||||||||||||| ||| ||||||||| |||| ||||| || Sbjct 8935 GACAGTTTCAGGCGGGCAGTTTGACTGGGGCAGTCACCTCCCAAAAGGTAATGGAGGTGC 8994 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| | ||||||| ||||| ||||| || | | |||| ||| ||| ||||| | | Sbjct 8995 ACAAAGGTTCCCTCAGGTTGGACGGAAATCAACCATAGAGTGTAAAAGCATAAGGGAGCT 9054 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 ||||||||| || || ||| ||||| |||||||||||| ||| ||||||| |||||| Sbjct 9055 TGACTGCGAGACTGACATGTCAAGCAGAGACGAAAGTCGGTTTTAGTGATCCGACGGTGC 9114 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 9115 TGCGTGGAAAGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 9161 Score = 221 bits (244), Expect = 2e-55 Identities = 185/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| |||| ||||||||||||||||||| ||| ||||||||| |||| ||||| || Sbjct 38208 GACAGTTTCAGGCGGGCAGTTTGACTGGGGCAGTCACCTCCCAAAAGGTAATGGAGGTGC 38149 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| | ||||||| ||||| ||||| || | | |||| ||| ||| ||||| | | Sbjct 38148 ACAAAGGTTCCCTCAGGTTGGACGGAAATCAACCATAGAGTGTAAAAGCATAAGGGAGCT 38089 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 ||||||||| || || ||| ||||| |||||||||||| ||| ||||||| |||||| Sbjct 38088 TGACTGCGAGACTGACATGTCAAGCAGAGACGAAAGTCGGTTTTAGTGATCCGACGGTGC 38029 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 38028 TGCGTGGAAAGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 37982 >seq18 Length=47425 Score = 123 bits (136), Expect = 5e-26 Identities = 165/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 8883 GACAATGTATGTGAGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGT 8942 Query 173 CCAAAGATACCCTCAGCTTGGAT-GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||| || |||| | ||| ||||||| | | || || || | ||| || Sbjct 8943 GCGAAGGTAAACTCAATGTAGATCGGAAACCTACTGAAGAGCATAATGGTATAAGTTTGC 9002 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| | | | || || ||||| |||||||||||| | ||||||||| || Sbjct 9003 CTGACTGCAAGATTCACAGATCGAGCAGAGACGAAAGTCGGTCATAATGATCCACAAGTA 9062 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||||| ||| ||| ||| || |||| ||| | |||||| Sbjct 9063 CTGAGTGGAAAGGCTTGTGCTTAACGAATCAAAGATACGCCAGGGATA 9110 Score = 123 bits (136), Expect = 5e-26 Identities = 165/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 27423 GACAATGTATGTGAGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGT 27364 Query 173 CCAAAGATACCCTCAGCTTGGAT-GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||| || |||| | ||| ||||||| | | || || || | ||| || Sbjct 27363 GCGAAGGTAAACTCAATGTAGATCGGAAACCTACTGAAGAGCATAATGGTATAAGTTTGC 27304 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| | | | || || ||||| |||||||||||| | ||||||||| || Sbjct 27303 CTGACTGCAAGATTCACAGATCGAGCAGAGACGAAAGTCGGTCATAATGATCCACAAGTA 27244 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||||| ||| ||| ||| || |||| ||| | |||||| Sbjct 27243 CTGAGTGGAAAGGCTTGTGCTTAACGAATCAAAGATACGCCAGGGATA 27196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982399813344