Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq19 215 1e-53 seq18 163 6e-38 >seq19 Length=72585 Score = 215 bits (238), Expect = 1e-53 Identities = 253/337 (75%), Gaps = 20/337 (6%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| ||| || || || | | ||||| || | | || |||| |||||| ||| Sbjct 5397 TTTACAACCCGCAGGCCGTCATCCTT-CACGCAGCGTCG-CTCCGTCAGACTTTCGTCCA 5340 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 5339 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAAT 5280 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| ||||||||||||||||| ||| ||||||||||||||| ||||||||| ||| Sbjct 5279 GTGGCTGTTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTATGCCATTACCACAC 5220 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| | | |||| | | || |||| | |||| Sbjct 5219 CAACTAGCTAATCAGACGCAAGATCAT-------CCCTCGG--CGAA------ATTCTTT 5175 Query 242 CTC-CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | | || || ||||| ||||||||| ||||||| | ||| ||||| || | Sbjct 5174 CACTCCACAG--CGTATCGGGTATTAGCTCTCGTTTCCAAGAGTTGTCCCCGACCGAGGG 5117 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCT 337 |||||||| || | || ||||||||| |||| |||| Sbjct 5116 GCAGATTCTTACGTGTTCCTCACCCGTTCGCCACTCT 5080 Score = 215 bits (238), Expect = 1e-53 Identities = 253/337 (75%), Gaps = 20/337 (6%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| ||| || || || | | ||||| || | | || |||| |||||| ||| Sbjct 41746 TTTACAACCCGCAGGCCGTCATCCTT-CACGCAGCGTCG-CTCCGTCAGACTTTCGTCCA 41803 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 41804 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAAT 41863 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| ||||||||||||||||| ||| ||||||||||||||| ||||||||| ||| Sbjct 41864 GTGGCTGTTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTATGCCATTACCACAC 41923 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| | | |||| | | || |||| | |||| Sbjct 41924 CAACTAGCTAATCAGACGCAAGATCAT-------CCCTCGG--CGAA------ATTCTTT 41968 Query 242 CTC-CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | | || || ||||| ||||||||| ||||||| | ||| ||||| || | Sbjct 41969 CACTCCACAG--CGTATCGGGTATTAGCTCTCGTTTCCAAGAGTTGTCCCCGACCGAGGG 42026 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCT 337 |||||||| || | || ||||||||| |||| |||| Sbjct 42027 GCAGATTCTTACGTGTTCCTCACCCGTTCGCCACTCT 42063 >seq18 Length=47425 Score = 163 bits (180), Expect = 6e-38 Identities = 149/187 (80%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||||| || | | |||||| |||||| ||||||||| ||||| ||||||| Sbjct 6316 TCACTCACGCGATATAG-CAGGATCACACTTTCGTGCATTGTCCATGATTCCTCACTGCT 6258 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 | ||||| | |||| |||| |||||||||||| |||||||| |||||||||| || ||| Sbjct 6257 GTCTCCCATGGGAGCCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGCTAAGAT 6198 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGG 203 ||| || |||| ||| ||||||| ||| || || ||||||||| |||||| | |||| Sbjct 6197 CAGCTAAAGATCTTCGACTTGGTGCGCCCTTCCCACACCAACTATCTAATCTTATGTAGG 6138 Query 204 CTCATCT 210 || |||| Sbjct 6137 CTTATCT 6131 Score = 163 bits (180), Expect = 6e-38 Identities = 149/187 (80%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||||| || | | |||||| |||||| ||||||||| ||||| ||||||| Sbjct 29990 TCACTCACGCGATATAG-CAGGATCACACTTTCGTGCATTGTCCATGATTCCTCACTGCT 30048 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 | ||||| | |||| |||| |||||||||||| |||||||| |||||||||| || ||| Sbjct 30049 GTCTCCCATGGGAGCCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGCTAAGAT 30108 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGG 203 ||| || |||| ||| ||||||| ||| || || ||||||||| |||||| | |||| Sbjct 30109 CAGCTAAAGATCTTCGACTTGGTGCGCCCTTCCCACACCAACTATCTAATCTTATGTAGG 30168 Query 204 CTCATCT 210 || |||| Sbjct 30169 CTTATCT 30175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071999796320