Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq19 232 2e-58 seq18 140 1e-30 >seq19 Length=72585 Score = 232 bits (256), Expect = 2e-58 Identities = 428/611 (70%), Gaps = 40/611 (7%) Strand=Plus/Minus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCAC--TTCCCGGCATTCG 60 |||||||||||||| |||||||||||||||| | | | | ||| || |||| Sbjct 7772 GACTACGGAGCTTA-TCCCCCGCAGTCTCACTGGCTGATTGAAAGCGTTCTAGGTATTCC 7714 Query 61 GAGTTTGGTTGATTTCGGTAA-GCTTGTGG-GCCCCCTAGACC-ATCCAGTGCTCTACCT 117 ||||||| | | |||| |||| | |||| | ||| | ||| ||| |||| Sbjct 7713 GAGTTTGCAACAGATTGGTACCGCTTTCGCAGCCCGC---ACCGAGACAGCGCTTTACCC 7657 Query 118 CCGGGAAGAA-ACACGCGAC-GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 || |||| | | | || ||||| ||| || |||||||| ||||||||||||| | | Sbjct 7656 CCTAGAAGCCCATAATCAACCGCTGCGCCTCAACGCATTTCGAGGAGAACCAGCTAGCTC 7597 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||| ||||||| ||||||||||| ||||| |||||| | |||||||| | || Sbjct 7596 CAAGTTCGATTGGCATTTCACCCCTAACCACAACTCATCCGTCGATTTTTCAACATCGGT 7537 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 |||||| ||||||| || | ||| |||||| ||| ||||| |||||||| | Sbjct 7536 CGGTTCGAACCTCCACTTCGTATCACCAAAGCTTCATTCTGGTCATGGTTAGATCACCTG 7477 Query 296 GCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTA 355 | ||||||||| || | || | | ||||| || ||| ||||||||| |||| Sbjct 7476 GGTTCGGGTCTAGAAGAAGGGACG-AGA-GCCCTTATCAGACATGCTTTCGCTTTGGCTT 7419 Query 356 CCCCACACGGG-----TTAACCTCGCGACACAACG-CAAACTCGCAGGCTCATTCTTCAA 409 | | || ||||||| | ||| | | || |||| | ||||||||||| Sbjct 7418 CG----ATGGAAAATCTTAACCT---GCCACTTCTTCTAAGTCGCCAGATCATTCTTCAA 7366 Query 410 AAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACAT 469 ||||| || |||| || | | || |||| || |||||| ||| | Sbjct 7365 CAGGCATGCGGTCAGATGT----------GTTCATC--CTCCCACAAATTGTAAGCATAC 7318 Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCA-GGGGTACTTTTCACCTTTCCCTCACGGTAC 528 ||||||| || ||||||||||||||| | ||||| ||||||||||||||||| |||||| Sbjct 7317 GGTTTCATGTTCTATTTCACTCCCCGTAAAGGGGTTCTTTTCACCTTTCCCTCGCGGTAC 7258 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCAC 588 | || ||||||||| ||| |||||||||||| |||| |||||||| || ||||| Sbjct 7257 TATTC-GCTATCGGTGACCTAGGAGTATTTAGCCTTACGAGGTGGTCCTCGCAAATTCAT 7199 Query 589 ACGAAATTTCA 599 ||| |||||| Sbjct 7198 ACGGGATTTCA 7188 Score = 232 bits (256), Expect = 2e-58 Identities = 428/611 (70%), Gaps = 40/611 (7%) Strand=Plus/Plus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCAC--TTCCCGGCATTCG 60 |||||||||||||| |||||||||||||||| | | | | ||| || |||| Sbjct 39371 GACTACGGAGCTTA-TCCCCCGCAGTCTCACTGGCTGATTGAAAGCGTTCTAGGTATTCC 39429 Query 61 GAGTTTGGTTGATTTCGGTAA-GCTTGTGG-GCCCCCTAGACC-ATCCAGTGCTCTACCT 117 ||||||| | | |||| |||| | |||| | ||| | ||| ||| |||| Sbjct 39430 GAGTTTGCAACAGATTGGTACCGCTTTCGCAGCCCGC---ACCGAGACAGCGCTTTACCC 39486 Query 118 CCGGGAAGAA-ACACGCGAC-GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 || |||| | | | || ||||| ||| || |||||||| ||||||||||||| | | Sbjct 39487 CCTAGAAGCCCATAATCAACCGCTGCGCCTCAACGCATTTCGAGGAGAACCAGCTAGCTC 39546 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||| ||||||| ||||||||||| ||||| |||||| | |||||||| | || Sbjct 39547 CAAGTTCGATTGGCATTTCACCCCTAACCACAACTCATCCGTCGATTTTTCAACATCGGT 39606 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 |||||| ||||||| || | ||| |||||| ||| ||||| |||||||| | Sbjct 39607 CGGTTCGAACCTCCACTTCGTATCACCAAAGCTTCATTCTGGTCATGGTTAGATCACCTG 39666 Query 296 GCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTA 355 | ||||||||| || | || | | ||||| || ||| ||||||||| |||| Sbjct 39667 GGTTCGGGTCTAGAAGAAGGGACG-AGA-GCCCTTATCAGACATGCTTTCGCTTTGGCTT 39724 Query 356 CCCCACACGGG-----TTAACCTCGCGACACAACG-CAAACTCGCAGGCTCATTCTTCAA 409 | | || ||||||| | ||| | | || |||| | ||||||||||| Sbjct 39725 CG----ATGGAAAATCTTAACCT---GCCACTTCTTCTAAGTCGCCAGATCATTCTTCAA 39777 Query 410 AAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACAT 469 ||||| || |||| || | | || |||| || |||||| ||| | Sbjct 39778 CAGGCATGCGGTCAGATGT----------GTTCATC--CTCCCACAAATTGTAAGCATAC 39825 Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCA-GGGGTACTTTTCACCTTTCCCTCACGGTAC 528 ||||||| || ||||||||||||||| | ||||| ||||||||||||||||| |||||| Sbjct 39826 GGTTTCATGTTCTATTTCACTCCCCGTAAAGGGGTTCTTTTCACCTTTCCCTCGCGGTAC 39885 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCAC 588 | || ||||||||| ||| |||||||||||| |||| |||||||| || ||||| Sbjct 39886 TATTC-GCTATCGGTGACCTAGGAGTATTTAGCCTTACGAGGTGGTCCTCGCAAATTCAT 39944 Query 589 ACGAAATTTCA 599 ||| |||||| Sbjct 39945 ACGGGATTTCA 39955 >seq18 Length=47425 Score = 140 bits (154), Expect = 1e-30 Identities = 344/509 (68%), Gaps = 27/509 (5%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCC-TAGACCATCCAGTGCT 111 || ||||||||||| |||| | ||||| || ||| ||||| ||| || |||||| Sbjct 7777 GGTATTCGGAGTTTCCTTGAGAGCAGTAAGGTTTTGGACCCCCATAGCTCAATGAGTGCT 7718 Query 112 CTACCTCCGGGAAGAAACACGCG-----ACGCTGCACCTAAATGCATTTCGGGGAGAACC 166 ||||| || || | | ||||| |||| ||| |||||| | |||||| Sbjct 7717 CTACCCCCATTAACAGTTTTGTCTATGTACGCTTTACCTCAATAAATTTCGCGAAGAACC 7658 Query 167 AGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTC 226 |||||| | |||||||||||||||||||||||| | || |||||| | | || | Sbjct 7657 AGCTATTTCTAAGTTTGATTGGCCTTTCACCCCTTATCTCAAATCATCCGCGCCTATTGC 7598 Query 227 AACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATA 286 || | || |||||||||||||| | |||| | |||||||||| || | | Sbjct 7597 TACAGACGTCGGTTCGGTCCTCCAAAAGACATTACGCTTTCTTCAACCTGTTCAAGATAA 7538 Query 287 GATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCG 346 |||||||| | |||||||| || || | || ||||| | || |||| ||||| | Sbjct 7537 GATCACTTAGTTTCGGGTC-AAATGAAGCAAATCTCACGCCTTTGTC-GACTTGCTTTTG 7480 Query 347 CTACGGCTACCCCACACGGGTTAACCTCGC-GAC--ACAACGCAAACTCGCAGGCTCATT 403 ||||| | | | ||| | ||| ||| || | | | |||| | | |||| Sbjct 7479 CTACGCGTCCACATCACTGCTTA----CGCATACTTGCTTCATTTAGTCGCTGACCCATT 7424 Query 404 CTTCAAAAGGCACGCCGTCAC-CTGGTACCTAAAAGGC----ACTTCAGCTCCGACGGAT 458 | ||||||| || | ||||| ||| | ||| || | || | |||||| | | | Sbjct 7423 ATGCAAAAGGTACACTGTCACTCTGTT--TTAATAGACTAAAACATAAGCTCCAATTGCT 7366 Query 459 TGTAGGCACATGGTTTCAGGTACTATTTCACTCC---CCGCCAGGGGTACTTTTCACCTT 515 ||| | | ||||||| | || ||||||||| | | |||| ||||||||||| Sbjct 7365 TGTCAGTATTCTGTTTCAGAT-CT-TTTCACTCCCTACGGTGTAGGGTTCTTTTCACCTT 7308 Query 516 TCCCTCACGGTACTTGTCCGCTATCGGTC 544 ||||||||||||||||| | |||||| || Sbjct 7307 TCCCTCACGGTACTTGTACACTATCGATC 7279 Score = 140 bits (154), Expect = 1e-30 Identities = 344/509 (68%), Gaps = 27/509 (5%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCC-TAGACCATCCAGTGCT 111 || ||||||||||| |||| | ||||| || ||| ||||| ||| || |||||| Sbjct 28529 GGTATTCGGAGTTTCCTTGAGAGCAGTAAGGTTTTGGACCCCCATAGCTCAATGAGTGCT 28588 Query 112 CTACCTCCGGGAAGAAACACGCG-----ACGCTGCACCTAAATGCATTTCGGGGAGAACC 166 ||||| || || | | ||||| |||| ||| |||||| | |||||| Sbjct 28589 CTACCCCCATTAACAGTTTTGTCTATGTACGCTTTACCTCAATAAATTTCGCGAAGAACC 28648 Query 167 AGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTC 226 |||||| | |||||||||||||||||||||||| | || |||||| | | || | Sbjct 28649 AGCTATTTCTAAGTTTGATTGGCCTTTCACCCCTTATCTCAAATCATCCGCGCCTATTGC 28708 Query 227 AACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATA 286 || | || |||||||||||||| | |||| | |||||||||| || | | Sbjct 28709 TACAGACGTCGGTTCGGTCCTCCAAAAGACATTACGCTTTCTTCAACCTGTTCAAGATAA 28768 Query 287 GATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCG 346 |||||||| | |||||||| || || | || ||||| | || |||| ||||| | Sbjct 28769 GATCACTTAGTTTCGGGTC-AAATGAAGCAAATCTCACGCCTTTGTC-GACTTGCTTTTG 28826 Query 347 CTACGGCTACCCCACACGGGTTAACCTCGC-GAC--ACAACGCAAACTCGCAGGCTCATT 403 ||||| | | | ||| | ||| ||| || | | | |||| | | |||| Sbjct 28827 CTACGCGTCCACATCACTGCTTA----CGCATACTTGCTTCATTTAGTCGCTGACCCATT 28882 Query 404 CTTCAAAAGGCACGCCGTCAC-CTGGTACCTAAAAGGC----ACTTCAGCTCCGACGGAT 458 | ||||||| || | ||||| ||| | ||| || | || | |||||| | | | Sbjct 28883 ATGCAAAAGGTACACTGTCACTCTGTT--TTAATAGACTAAAACATAAGCTCCAATTGCT 28940 Query 459 TGTAGGCACATGGTTTCAGGTACTATTTCACTCC---CCGCCAGGGGTACTTTTCACCTT 515 ||| | | ||||||| | || ||||||||| | | |||| ||||||||||| Sbjct 28941 TGTCAGTATTCTGTTTCAGAT-CT-TTTCACTCCCTACGGTGTAGGGTTCTTTTCACCTT 28998 Query 516 TCCCTCACGGTACTTGTCCGCTATCGGTC 544 ||||||||||||||||| | |||||| || Sbjct 28999 TCCCTCACGGTACTTGTACACTATCGATC 29027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817599654656