Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq19 140 8e-31 seq18 104 6e-20 >seq19 Length=72585 Score = 140 bits (154), Expect = 8e-31 Identities = 280/401 (70%), Gaps = 28/401 (7%) Strand=Plus/Minus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 ||||||||| ||||||||| |||||| || ||| | ||| || ||| || ||| Sbjct 7551 TTTTTCAACATCGGTCGGTTCGAACCTCCACTTCGTA-TCACCAAAGCTT-CATTCTGGT 7494 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| || |||||| || || || |||||||| || ||| ||| ||||| | ||| Sbjct 7493 CAT-GGTTAGATCACCTGGGTT-CGGGTCTAGAAGA-AGGGACGAGA-GCCCTTATCAGA 7438 Query 149 CTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT----TGCCACTGAAAATAAGTC 204 | ||||| |||| | || | | || || ||| ||||||| |||||| Sbjct 7437 CATGCTTT-CGCTTTGGCTTCGAT----GGAAAATCTTAACCTGCCACTTCTTCTAAGTC 7383 Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC----TCCCACTGCT 260 || |||| | ||| ||| | || |||| | ||| | |||||| | Sbjct 7382 GCCAGATCATTCTTCAACAGGCATGCGGTCAG------ATGTGTTCATCCTCCCACAAAT 7329 Query 261 TGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTC 320 |||| ||||||||||||| | ||||||||||||||| |||||||||||| |||||| Sbjct 7328 TGTAAGCATACGGTTTCATGTTCTATTTCACTCCCCGTAAAGGGGTTCTTTTCACCTTTC 7269 Query 321 CCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT-GGAGGATGGTCC 379 |||| |||||||| ||| |||||||| | || ||||||||||||| |||| |||||| Sbjct 7268 CCTCGCGGTACTA-TTCGCTATCGGTGACCTAGGAGTATTTAGCCTTACGAGG-TGGTCC 7211 Query 380 CCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | || ||||| || |||| |||| || | ||||||| Sbjct 7210 TCGCAAATTCATACGGGATTTCACGTGTCCCATACTACTCG 7170 Score = 140 bits (154), Expect = 8e-31 Identities = 280/401 (70%), Gaps = 28/401 (7%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 ||||||||| ||||||||| |||||| || ||| | ||| || ||| || ||| Sbjct 39592 TTTTTCAACATCGGTCGGTTCGAACCTCCACTTCGTA-TCACCAAAGCTT-CATTCTGGT 39649 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| || |||||| || || || |||||||| || ||| ||| ||||| | ||| Sbjct 39650 CAT-GGTTAGATCACCTGGGTT-CGGGTCTAGAAGA-AGGGACGAGA-GCCCTTATCAGA 39705 Query 149 CTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT----TGCCACTGAAAATAAGTC 204 | ||||| |||| | || | | || || ||| ||||||| |||||| Sbjct 39706 CATGCTTT-CGCTTTGGCTTCGAT----GGAAAATCTTAACCTGCCACTTCTTCTAAGTC 39760 Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC----TCCCACTGCT 260 || |||| | ||| ||| | || |||| | ||| | |||||| | Sbjct 39761 GCCAGATCATTCTTCAACAGGCATGCGGTCAG------ATGTGTTCATCCTCCCACAAAT 39814 Query 261 TGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTC 320 |||| ||||||||||||| | ||||||||||||||| |||||||||||| |||||| Sbjct 39815 TGTAAGCATACGGTTTCATGTTCTATTTCACTCCCCGTAAAGGGGTTCTTTTCACCTTTC 39874 Query 321 CCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT-GGAGGATGGTCC 379 |||| |||||||| ||| |||||||| | || ||||||||||||| |||| |||||| Sbjct 39875 CCTCGCGGTACTA-TTCGCTATCGGTGACCTAGGAGTATTTAGCCTTACGAGG-TGGTCC 39932 Query 380 CCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | || ||||| || |||| |||| || | ||||||| Sbjct 39933 TCGCAAATTCATACGGGATTTCACGTGTCCCATACTACTCG 39973 >seq18 Length=47425 Score = 104 bits (114), Expect = 6e-20 Identities = 149/209 (71%), Gaps = 17/209 (8%) Strand=Plus/Minus Query 201 AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA-------------ACAAAGTG 247 ||||||||||||||||| |||||||||| | ||||| | | || | Sbjct 7438 AGTCGCTGACCCATTATGCAAAAGGTACACTGTCACTCTGTTTTAATAGACTAAAACATA 7379 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG--GGG 305 ||||| | ||||||| | || | ||||||| |||| |||||||||| | | ||| Sbjct 7378 AGCTCCAATTGCTTGTCAGTATTCTGTTTCAG-ATCT-TTTCACTCCCTACGGTGTAGGG 7321 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| |||||||||||||||||| || |||||||| || | | |||| || | Sbjct 7320 TTCTTTTCACCTTTCCCTCACGGTACTTGTACACTATCGATCTATATATCATATTCAGGC 7261 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACA 394 || || | |||| | || || |||| ||| Sbjct 7260 TTAGAAGGTGGTTCTCCTATCTTCAAACA 7232 Score = 104 bits (114), Expect = 6e-20 Identities = 149/209 (71%), Gaps = 17/209 (8%) Strand=Plus/Plus Query 201 AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA-------------ACAAAGTG 247 ||||||||||||||||| |||||||||| | ||||| | | || | Sbjct 28868 AGTCGCTGACCCATTATGCAAAAGGTACACTGTCACTCTGTTTTAATAGACTAAAACATA 28927 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG--GGG 305 ||||| | ||||||| | || | ||||||| |||| |||||||||| | | ||| Sbjct 28928 AGCTCCAATTGCTTGTCAGTATTCTGTTTCAG-ATCT-TTTCACTCCCTACGGTGTAGGG 28985 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| |||||||||||||||||| || |||||||| || | | |||| || | Sbjct 28986 TTCTTTTCACCTTTCCCTCACGGTACTTGTACACTATCGATCTATATATCATATTCAGGC 29045 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACA 394 || || | |||| | || || |||| ||| Sbjct 29046 TTAGAAGGTGGTTCTCCTATCTTCAAACA 29074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241599764096