Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq19 194 4e-47 seq18 156 1e-35 >seq19 Length=72585 Score = 194 bits (214), Expect = 4e-47 Identities = 247/339 (73%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 65 ||||| |||| ||||||||| |||||||||||||||||||||||| ||| || || | Sbjct 5433 GAGGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAAGTG 5492 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 |||| |||||| | ||||||||||| || ||||| || | ||||| || ||| Sbjct 5493 TTATTCGGAATGATTGGGCGTAAAGCGTCTGTAGGCTGTATAGAAAGTCTTTTGTTAAAT 5552 Query 126 GCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAA 185 || ||||||||| | | || |||||| | || ||| | || || || | Sbjct 5553 GCCTCGGCTCAACCGAGATCCAGCAAAGGAAACTTCTATACTTGAGGGAAGTAGAGGTAC 5612 Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCA--GTGGCGA 243 |||||||| ||| ||||||||||||||||||||| |||||||||||| |||||| Sbjct 5613 AGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGATATCGGGAGGAACACCAATATGGCGA 5672 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 |||| | |||| || || ||||| || || ||||||| |||| | ||||| Sbjct 5673 AGGCACTGTACTGGGCTTTACCTGACGCTCAGAGACGAAAGCTAAAGGAGTGATTAGGAT 5732 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACT 342 |||||||||| ||| | ||||||||||||| | ||| Sbjct 5733 TAGATACCCTAGTAATTTTAGCCGTAAACGATGGAAACT 5771 Score = 194 bits (214), Expect = 4e-47 Identities = 247/339 (73%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 65 ||||| |||| ||||||||| |||||||||||||||||||||||| ||| || || | Sbjct 41710 GAGGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAAGTG 41651 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 |||| |||||| | ||||||||||| || ||||| || | ||||| || ||| Sbjct 41650 TTATTCGGAATGATTGGGCGTAAAGCGTCTGTAGGCTGTATAGAAAGTCTTTTGTTAAAT 41591 Query 126 GCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAA 185 || ||||||||| | | || |||||| | || ||| | || || || | Sbjct 41590 GCCTCGGCTCAACCGAGATCCAGCAAAGGAAACTTCTATACTTGAGGGAAGTAGAGGTAC 41531 Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCA--GTGGCGA 243 |||||||| ||| ||||||||||||||||||||| |||||||||||| |||||| Sbjct 41530 AGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGATATCGGGAGGAACACCAATATGGCGA 41471 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 |||| | |||| || || ||||| || || ||||||| |||| | ||||| Sbjct 41470 AGGCACTGTACTGGGCTTTACCTGACGCTCAGAGACGAAAGCTAAAGGAGTGATTAGGAT 41411 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACT 342 |||||||||| ||| | ||||||||||||| | ||| Sbjct 41410 TAGATACCCTAGTAATTTTAGCCGTAAACGATGGAAACT 41372 >seq18 Length=47425 Score = 156 bits (172), Expect = 1e-35 Identities = 243/342 (71%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 3 CTTGAGGAGGAAGCCCCGGCTAACTAC-GTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 |||| || |||||||||||||| | |||||||||||||||||||||| | ||||| Sbjct 6386 CTTGCAGAAGAAGCCCCGGCTAATATCTGTGCCAGCAGCCGCGGTAATACAGAAGGGGCA 6445 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT--TTCTTAAGTCAGAGG 119 || ||||| |||||| | |||||||||| || | |||||| || ||| || | | Sbjct 6446 AGTGTTATTCGGAATAATTGGGCGTAAATGGCGTGTAGGTTGTGTTTCGTAGCTTTTTGT 6505 Query 120 TGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAG--- 176 | || ||| | | | | | || |||| | | | || | || || Sbjct 6506 TAAATCCTTATTGGT-ATGATAAGTAAAGC----GAAAA-GAACAGTTACACTGGAGACT 6559 Query 177 --GAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACAC 234 |||||| ||| |||||| |||||| || || |||| | |||||||||| |||||||| Sbjct 6560 GAGAGGGGAAAGGGGAATTTCTAGTGGAGAAGTTAAATTCTTAGATATTAGAAGGAACAC 6619 Query 235 CAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGC 294 | ||||| || ||| |||| | ||||||||||||| |||| ||||||||||| Sbjct 6620 CGAAAGCGAAAGCACCTTTCTGGCTCAGATCTGACACTGAGGCGCGAAGGCGTGGGGAGC 6679 Query 295 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 || ||||||||||| ||||||||||| || ||||||| Sbjct 6680 GAAGCCGATTAGATACCGGCGTAGTCCACGCAGTCAACGATG 6721 Score = 156 bits (172), Expect = 1e-35 Identities = 243/342 (71%), Gaps = 14/342 (4%) Strand=Plus/Minus Query 3 CTTGAGGAGGAAGCCCCGGCTAACTAC-GTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 |||| || |||||||||||||| | |||||||||||||||||||||| | ||||| Sbjct 29920 CTTGCAGAAGAAGCCCCGGCTAATATCTGTGCCAGCAGCCGCGGTAATACAGAAGGGGCA 29861 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT--TTCTTAAGTCAGAGG 119 || ||||| |||||| | |||||||||| || | |||||| || ||| || | | Sbjct 29860 AGTGTTATTCGGAATAATTGGGCGTAAATGGCGTGTAGGTTGTGTTTCGTAGCTTTTTGT 29801 Query 120 TGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAG--- 176 | || ||| | | | | | || |||| | | | || | || || Sbjct 29800 TAAATCCTTATTGGT-ATGATAAGTAAAGC----GAAAA-GAACAGTTACACTGGAGACT 29747 Query 177 --GAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACAC 234 |||||| ||| |||||| |||||| || || |||| | |||||||||| |||||||| Sbjct 29746 GAGAGGGGAAAGGGGAATTTCTAGTGGAGAAGTTAAATTCTTAGATATTAGAAGGAACAC 29687 Query 235 CAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGC 294 | ||||| || ||| |||| | ||||||||||||| |||| ||||||||||| Sbjct 29686 CGAAAGCGAAAGCACCTTTCTGGCTCAGATCTGACACTGAGGCGCGAAGGCGTGGGGAGC 29627 Query 295 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 || ||||||||||| ||||||||||| || ||||||| Sbjct 29626 GAAGCCGATTAGATACCGGCGTAGTCCACGCAGTCAACGATG 29585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203199771392