Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq19 176 2e-41 seq18 86.0 2e-14 >seq19 Length=72585 Score = 176 bits (194), Expect = 2e-41 Identities = 366/534 (69%), Gaps = 17/534 (3%) Strand=Plus/Plus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 |||||||||| ||| |||||||| ||||| |||| |||||| | ||| | ||| ||| Sbjct 7465 TAGACCCGAACCCAGGTGATCTAACCATGACCAGAATGAAGCTTTGGTGATACGAAGTGG 7524 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 |||| |||||| || |||||||||||| ||||||| ||||| ||||||||||| || Sbjct 7525 AGGTTCGAACCGACCGATGTTGAAAAATCGACGGATGAGTTGTGGTTAGGGGTGAAATGC 7584 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC-CTCAAGTA 211 || | |||||||| |||||||||||| ||||| || ||| || | | || Sbjct 7585 CAATCGAACTTGGAGCTAGCTGGTTCTCCTCGAAATGCGTTGAGGCGCAGCGGTTGATTA 7644 Query 212 TCACCATC--GGGGGTAGAGCACTGTTATGGCTAGGG-GGTCATTGCGACTTACCAAACC 268 | | || ||||||| ||| |||| || ||| | | ||| |||||| | Sbjct 7645 TGGGCTTCTAGGGGGTAAAGCGCTGTCTCGGTGCGGGCTGCGAAAGCG--GTACCAATCT 7702 Query 269 ATTGCAAACTCCGAATGC--GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAG 326 |||||||||| |||| | | | ||| | | |||||| ||| | |||| Sbjct 7703 GTTGCAAACTCGGAATACCTAGAACGCTTTCAATCAGCCAGTGAGACTGCGGGGGATAAG 7762 Query 327 GTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAA 386 ||||| | | ||| || | || ||| | |||||||||| || |||| | |||||| Sbjct 7763 CTCCGTAGTCAAAAGGGAAACAGCCCAGACCACCAGCTAAGGCTCCTAAATAAAAGCTAA 7822 Query 387 GTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 446 || | || || || | ||| |||| |||| ||| || | |||||||||| Sbjct 7823 GT--GGCAAAGGAGGTAAAAATGCAGTGACAATCAGGAGGTTTGCCTAGAAGCAGCCA-C 7879 Query 447 CATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGT 506 | |||||||||||||||| |||||||| || || | ||| || ||| | | || Sbjct 7880 CCTTTAAAGAGTGCGTAATAGCTCACTGATCAAGCGTTTTCGCGCCGAAAATGA-CCGGA 7938 Query 507 ATTAAGTTGTCTACCGAAGCAGTGG---GATCATTTATATGATCGGTAGGGGAG 557 | |||||| | | ||||||| |||| |||| || ||||| |||||| || Sbjct 7939 ACTAAGTTTTTTGCCGAAGCTGTGGCTACATCACATAGATGAT--GTAGGGTAG 7990 Score = 176 bits (194), Expect = 2e-41 Identities = 366/534 (69%), Gaps = 17/534 (3%) Strand=Plus/Minus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 |||||||||| ||| |||||||| ||||| |||| |||||| | ||| | ||| ||| Sbjct 39678 TAGACCCGAACCCAGGTGATCTAACCATGACCAGAATGAAGCTTTGGTGATACGAAGTGG 39619 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 |||| |||||| || |||||||||||| ||||||| ||||| ||||||||||| || Sbjct 39618 AGGTTCGAACCGACCGATGTTGAAAAATCGACGGATGAGTTGTGGTTAGGGGTGAAATGC 39559 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC-CTCAAGTA 211 || | |||||||| |||||||||||| ||||| || ||| || | | || Sbjct 39558 CAATCGAACTTGGAGCTAGCTGGTTCTCCTCGAAATGCGTTGAGGCGCAGCGGTTGATTA 39499 Query 212 TCACCATC--GGGGGTAGAGCACTGTTATGGCTAGGG-GGTCATTGCGACTTACCAAACC 268 | | || ||||||| ||| |||| || ||| | | ||| |||||| | Sbjct 39498 TGGGCTTCTAGGGGGTAAAGCGCTGTCTCGGTGCGGGCTGCGAAAGCG--GTACCAATCT 39441 Query 269 ATTGCAAACTCCGAATGC--GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAG 326 |||||||||| |||| | | | ||| | | |||||| ||| | |||| Sbjct 39440 GTTGCAAACTCGGAATACCTAGAACGCTTTCAATCAGCCAGTGAGACTGCGGGGGATAAG 39381 Query 327 GTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAA 386 ||||| | | ||| || | || ||| | |||||||||| || |||| | |||||| Sbjct 39380 CTCCGTAGTCAAAAGGGAAACAGCCCAGACCACCAGCTAAGGCTCCTAAATAAAAGCTAA 39321 Query 387 GTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 446 || | || || || | ||| |||| |||| ||| || | |||||||||| Sbjct 39320 GT--GGCAAAGGAGGTAAAAATGCAGTGACAATCAGGAGGTTTGCCTAGAAGCAGCCA-C 39264 Query 447 CATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGT 506 | |||||||||||||||| |||||||| || || | ||| || ||| | | || Sbjct 39263 CCTTTAAAGAGTGCGTAATAGCTCACTGATCAAGCGTTTTCGCGCCGAAAATGA-CCGGA 39205 Query 507 ATTAAGTTGTCTACCGAAGCAGTGG---GATCATTTATATGATCGGTAGGGGAG 557 | |||||| | | ||||||| |||| |||| || ||||| |||||| || Sbjct 39204 ACTAAGTTTTTTGCCGAAGCTGTGGCTACATCACATAGATGAT--GTAGGGTAG 39153 >seq18 Length=47425 Score = 86.0 bits (94), Expect = 2e-14 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||||| ||||||||| | || |||| ||||| |||| ||||| Sbjct 7519 GACCCGAAACTAAGTGATCTTATCTTGAACAGGTTGAAGAAAGCGTAATGTCTTTTGGAG 7578 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 | ||||||| || ||| | || | | |||||| || | ||||||||||||| | Sbjct 7579 GACCGAACCGACGTCTGTAGCAATAGGCGCGGATGATTTGAGATAAGGGGTGAAAGGCCA 7638 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 | ||||||| ||||||||||||||| ||||| |||| ||||| Sbjct 7639 ATCAAACTTAGAAATAGCTGGTTCTTCGCGAAATTTATTGAGGTA 7683 Score = 86.0 bits (94), Expect = 2e-14 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||||| ||||||||| | || |||| ||||| |||| ||||| Sbjct 28787 GACCCGAAACTAAGTGATCTTATCTTGAACAGGTTGAAGAAAGCGTAATGTCTTTTGGAG 28728 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 | ||||||| || ||| | || | | |||||| || | ||||||||||||| | Sbjct 28727 GACCGAACCGACGTCTGTAGCAATAGGCGCGGATGATTTGAGATAAGGGGTGAAAGGCCA 28668 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 | ||||||| ||||||||||||||| ||||| |||| ||||| Sbjct 28667 ATCAAACTTAGAAATAGCTGGTTCTTCGCGAAATTTATTGAGGTA 28623 Score = 77.0 bits (84), Expect = 1e-11 Identities = 58/67 (87%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||| |||||| |||||||||||||||||||||| | | | || |||||| |||||||| Sbjct 7909 GACAACTAGGAGGTTGGCTTGGAAGCAGCCATTC-TATCATGAAAGCGTAATAGCTCACT 7967 Query 474 AGTCGAG 480 ||||||| Sbjct 7968 AGTCGAG 7974 Score = 77.0 bits (84), Expect = 1e-11 Identities = 58/67 (87%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||| |||||| |||||||||||||||||||||| | | | || |||||| |||||||| Sbjct 28397 GACAACTAGGAGGTTGGCTTGGAAGCAGCCATTC-TATCATGAAAGCGTAATAGCTCACT 28339 Query 474 AGTCGAG 480 ||||||| Sbjct 28338 AGTCGAG 28332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689599678976