Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 241 1e-58 seq7 187 2e-42 >seq1 Length=2053059 Score = 241 bits (266), Expect = 1e-58 Identities = 519/769 (67%), Gaps = 14/769 (2%) Strand=Plus/Minus Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060 ||| || || | || ||||||||||| || || |||| || || | ||| |||||||| Sbjct 2015149 GGGCAGCGCGATGGACGCGAGGTTGCACACCGCGGTCTCCTCCGGCGAGGTGTACTCGAC 2015090 Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120 ||| |||||||| || || | | || |||||||| | ||||| || || |||||| Sbjct 2015089 AATCTCGGTGCAGAGGTTGGAGGATCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCG 2015030 Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGAT 66180 ||||| ||||||||| | | ||||||||| | || |||||||| |||||||| | ||| Sbjct 2015029 GTTGCACGCATCCTTGAAGAGCATGTACGGGTTACCAGTCTCAACCTGGGACTCGAGGAT 2014970 Query 66181 GGCGTGCCAAAGAGC-GC-GTGCCTTCACCGTA--CGTACC---GCCCTACCTTTGCGTT 66233 |||| ||| |||| || | ||||| ||||| | |||| ||||| | || | Sbjct 2014969 GGCGAACCA--GAGCTGCTGGGCCTTGACCGTCTTCTTACCCTTGCCCTCC----GCCT- 2014917 Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293 |||| | |||||| || ||||| || ||||| || | |||| || | Sbjct 2014916 CGTACTTTTCGTACAGAGCCTCGAACTCCTCGCCCCAGCAATCCGCGAGACCCGGGGCTT 2014857 Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353 || || || | || | ||| || || | || || || ||| || ||||| Sbjct 2014856 CGTTGGGGCAGAAGAGGGTCCACTCGCCGTTAGCCTCGACGCGCTTCATGAACAGATCGT 2014797 Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413 |||| ||| ||||||| || || | || || |||||| ||||||| || |||| Sbjct 2014796 TGGTCCACAGGCCGTAGAACAGGTCCCTGGCACGCGCCTCCTCCTTGCCGTGGTTCTTGC 2014737 Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473 | | |||||| | || |||||||| || ||||| || || |||||||||||||| | || Sbjct 2014736 GGAGGTCGAGCCAGTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGC 2014677 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 | | | |||||||| || ||||||||||| | ||| | ||| ||||| || | || Sbjct 2014676 CTTTCCTCTTGCCGCCGCCCTGGTCGACGTACCTCGCGGTGTCGTTAAAGACGCGAAGCA 2014617 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593 | || | || ||||| || | || ||||||||| |||| ||| || || | Sbjct 2014616 TGGGGATGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGTAGGAAGAGGTGGCGCGGA 2014557 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCA 66653 | ||||| | |||||| || || ||||| | ||| |||||| || || || | Sbjct 2014556 TGTCGTGGATGGACAGACCGATGCCGCCGGCGGACTTGGAGATGCACGCGCACTCCTTGA 2014497 Query 66654 CTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAA 66713 || | | ||||| || ||||| || |||| |||| | |||| | || || | Sbjct 2014496 GGGTATCGTAGATGCCCTCGATGGAATCCTCCTTCATGGCGATGAGGAAACACGACGACA 2014437 Query 66714 GTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGT 66762 | ||||| ||| || | | |||||| ||||| | ||||| || Sbjct 2014436 GCTGGGGGCGGGGGGTACCCGAGTTGAAGAGCGTGGGGGACGCGTGGGT 2014388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 |||||||||||| || || || ||| | ||||||||||| ||| || || ||| | || Sbjct 2015770 GAACTCGCCGGAGAGCACGCGGCGGGCGTAGATGTTGGAGGTGTACGGCTCGAAGCACTC 2015711 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| | ||| |||| || || || || |||||||| || |||| || ||||| Sbjct 2015710 GTTGTTGCCCAAAATCTGGGACGTGGACGCGGTGGGCATGGGCGCCACCAGCAGGGAGTT 2015651 Query 65554 TCGCAATCCGT 65564 || | |||| Sbjct 2015650 GCGGACGCCGT 2015640 >seq7 Length=1394110 Score = 187 bits (206), Expect = 2e-42 Identities = 555/843 (66%), Gaps = 20/843 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||||| || || ||||||| | ||||||| |||| | |||| ||| Sbjct 899908 ATGTACAAGCAGGCGGAGGCGTCATTCTGGAGCGCGGAGGAGATCGACCTCTCCATGGAC 899967 Query 61156 ATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 || ||||||| | || | | ||| | || || || ||||| || || | || Sbjct 899968 TACAAGGACTGGGTGACGCTGAACGA-CAACGAGCAGCACTTCATCTCGCACGTCCTCGC 900026 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 |||||| || || || ||||| ||||| ||||| || || ||| | |||| Sbjct 900027 GTTCTTCGCGGCGTCTGACGGGATCGTGCTCGAGAACCTAGGCCTCCGGTTCATGAAGGA 900086 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || || ||||||| || ||||||| || ||| | ||||| ||||| |||| Sbjct 900087 CGTCCAGCTGCCGGAGGCTCGGGCGTTCTACGCGTTTCAGCTCGCCATCGAGAACATCCA 900146 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAA 61392 |||||||| |||| | | |||||||| || ||| ||| || |||| | ||| | | Sbjct 900147 CTCGGAGACGTACGGGTTGCTCATCGACACCTACGTCAAGGACAGCGTGAAGAAGAGGCA 900206 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 | |||||| ||||| | | | || ||||| ||| || ||| | |||||| || Sbjct 900207 C--CTGTTCAGGGCCATTCACAACGTGCCCACGGTGGCGCGCAAGGCGCAGTGGGCCCTC 900264 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 || ||||| ||||| | ||| || | || ||| || |||| || ||| || Sbjct 900265 AAGTGGAT--CCAGT-CCTCGGAGTGTTTCGCCGAGCGACTGGTGGCGTTCGCGTGCGTG 900321 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| | || ||| ||||||||| ||||||||| ||| | ||||| || || || Sbjct 900322 GAGGGCATCTTCTTCTCCGGATCGTTTTGCGCAATCTTCTGGCTCAAGAAGCGCGGGCTC 900381 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 |||| ||| || |||||| ||| ||| | || || | ||||||||| | || || || Sbjct 900382 ATGCGCGGGCTCACCTTCTCCAACGAGCTCATCTCCAGGGACGAGGGCCTCCACTGCGAC 900441 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC-GTCG--GAGGAGCGTGTG 61689 || || | || || | || || | || | || ||| | ||| || Sbjct 900442 TTCGC---CTGCCTCCTCTA---CTCCATGCTCAAGCACCCTCTCGATCCCGCGCGGCTG 900495 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 ||||| || || ||||| ||||| |||| ||| || || ||| || | Sbjct 900496 CAGGAGATCGTCAAGGATGCGGTGGACATCGAGAAGGAGTTTGTGTGCGATGCTCTGTCG 900555 Query 61750 GTCTCACTCATCGGCATGAATTGTGGA-CTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 | | ||| | |||||||| | ||| || ||||| |||| || || ||||| || || Sbjct 900556 TGCGCGCTCGTGGGCATGAA-CGCGGATCTCATGTCCGAGTACATCGAGTTTGTCGCGGA 900614 Query 61809 CCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 ||| ||| || | | || || || | | | || || ||||| || || | Sbjct 900615 CCGCCTGATGACGCAGCTCGGCGTGGAGAAGGTGTGGAACACCCCCAACCCGTTCGAGTG 900674 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| ||||| ||||| | |||||| |||| || |||||| | || || | | | || Sbjct 900675 GATGGAGATGATATCGCTCCAGGGCAAGGCGAACTTCTTCGAGCACCGGGTGGACCAGTA 900734 Query 61929 TCA 61931 ||| Sbjct 900735 TCA 900737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567907938160