Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20commoda_20[refseq_20GCF_5F000090985.2_202009-04-10] 19 sequences; 21,109,336 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq5 105 3e-17 seq13 95.1 5e-14 >seq5 Length=1518631 Score = 105 bits (116), Expect = 3e-17 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 349073 GCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCG 349132 |||| || ||||||||||| | ||||| || ||||| |||||| ||| ||||||||| Sbjct 268353 GCGTTGATAATCTCCTTGATGCGGGGCACACCGAGGGTGACGTTCATGGACGCGACGCCC 268294 Query 349133 GCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATG 349180 || ||||||||||||| ||||||| |||||| |||||||||||| Sbjct 268293 GCGAAGTGGAAGGTCTTCAGGGTCATCTGCGTCCCCGGCTCGCCGATG 268246 >seq13 Length=1011177 Score = 95.1 bits (104), Expect = 5e-14 Identities = 99/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 349096 GGGCATGCCCAGGGTCACGTT--CTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGG 349153 ||| || || || |||||||| | | |||||| |||||| ||||||||||| | |||| Sbjct 710659 GGGGATTCCGAGCGTCACGTTGGCCTCGCCGCG--GCCGGCGAAGTGGAAGGTGTTGAGG 710716 Query 349154 GTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCG 349213 |||| ||||||| || ||||||| | | |||||||||| | || ||| |||||| Sbjct 710717 GTCATCTGCGTGGACGGTTCGCCGACGGATTGGCCCGCGATGCAACCGACCGCCTCGCCC 710776 Query 349214 GGCGCGGC 349221 |||||||| Sbjct 710777 GGCGCGGC 710784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084738680118162