Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2187 190 9e-46 >seq2187 Length=11887 Score = 190 bits (210), Expect = 9e-46 Identities = 144/170 (85%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||| ||||||||||||| |||| |||| ||||||| | ||||| | Sbjct 3939 TTCAAAGAGTCGTGTTGCTTGGGAATGCAGCACTAATTGGGTGGTAAATCCCATCTAAGG 3998 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 3999 CTAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 4058 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||| |||||||||||||||| | |||||||||||| |||||||| ||| Sbjct 4059 TTGAAAAGAGAGTTAAAAAGTGCTTGAAATTGTTGAGGGGGAAGCGTTTG 4108 Score = 80.6 bits (88), Expect = 1e-12 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||||||||| || | | || || ||||||||| |||||||||||||||||||||||| Sbjct 4283 GATGCTGGCAGAAAGTATTCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAT 4342 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCC 468 |||||||| |||||| |||||| Sbjct 4343 GTATGCGAGCTGGTGGGTGGAAAACCC 4369 Score = 78.8 bits (86), Expect = 4e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||||||||||||||||||| || || ||| ||||||||||| | || | ||||| Sbjct 4403 AGGAAACTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGG 4462 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 4463 TATAGGGGCGA 4473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079855856000