Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq6720 232 2e-58 >seq6720 Length=135362 Score = 232 bits (256), Expect = 2e-58 Identities = 294/402 (73%), Gaps = 8/402 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 38694 TACTTGAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGC 38753 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||| || |||||| | |||||||||||||| | ||| |||| | ||| | ||| Sbjct 38754 AAGCATTGTCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGTTTTTAAAGTCTACTGT 38813 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG-ACTGCACGACTAGAGTGTGTCAG 181 ||||||| | ||| ||| | ||| ||| | | | ||| | ||||||| || || Sbjct 38814 CAAATCCCAGAGCTCAACTTTGGACAGGCAGTGGAGTACTTAAAAGCTAGAGTATGGTAG 38873 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 || | |||||||| ||| ||| ||||||||| ||| || ||| |||||||| || Sbjct 38874 GGGTAGAGGGAATTCCTTGTGGAGCGGTGAAATGCACAGAGATAAGGAAGAACACCAGTG 38933 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| | ||||| | |||||| || | |||| ||| ||||||| || | Sbjct 38934 GCGAAGGCGCTCTACTGGGCCATGACTGACACTGAGAGACGATAGCTGGGGGAGCGAAAA 38993 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC 361 |||||||||||||| ||||||| ||| |||||||| |||| || || ||| Sbjct 38994 GGATTAGATACCCTTGTAGTCCCAGCCGTAAACGATGGACACTAAGTGCTG----TTTGA 39049 Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGG 403 | || | ||||||||||||| |||| ||||||||| Sbjct 39050 AGCAGTGCT---GTAGCTAACGCGTTAAGTGTCCCGCCTGGG 39088 Score = 232 bits (256), Expect = 2e-58 Identities = 294/402 (73%), Gaps = 8/402 (2%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 106954 TACTTGAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGC 106895 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||| || |||||| | |||||||||||||| | ||| |||| | ||| | ||| Sbjct 106894 AAGCATTGTCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGTTTTTAAAGTCTACTGT 106835 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG-ACTGCACGACTAGAGTGTGTCAG 181 ||||||| | ||| ||| | ||| ||| | | | ||| | ||||||| || || Sbjct 106834 CAAATCCCAGAGCTCAACTTTGGACAGGCAGTGGAGTACTTAAAAGCTAGAGTATGGTAG 106775 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 || | |||||||| ||| ||| ||||||||| ||| || ||| |||||||| || Sbjct 106774 GGGTAGAGGGAATTCCTTGTGGAGCGGTGAAATGCACAGAGATAAGGAAGAACACCAGTG 106715 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| | ||||| | |||||| || | |||| ||| ||||||| || | Sbjct 106714 GCGAAGGCGCTCTACTGGGCCATGACTGACACTGAGAGACGATAGCTGGGGGAGCGAAAA 106655 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC 361 |||||||||||||| ||||||| ||| |||||||| |||| || || ||| Sbjct 106654 GGATTAGATACCCTTGTAGTCCCAGCCGTAAACGATGGACACTAAGTGCTG----TTTGA 106599 Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGG 403 | || | ||||||||||||| |||| ||||||||| Sbjct 106598 AGCAGTGCT---GTAGCTAACGCGTTAAGTGTCCCGCCTGGG 106560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289513338880