Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq6720 143 4e-32 >seq6720 Length=135362 Score = 143 bits (158), Expect = 4e-32 Identities = 177/243 (73%), Gaps = 22/243 (9%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || ||| || | ||||| | ||| || |||| Sbjct 42393 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTAC-GACTTTGCGGAGACC 42335 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| | || || |||||||| | Sbjct 42334 TGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCT---------------G 42290 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 ||| | ||| || |||||||| ||||||||||||||||| |||||||| ||||| Sbjct 42289 ATGTT----ATCAG--GCGCCCCTTCTTCCGAAGTTACGGGGCCAGTTTGCCGAGTTCCT 42236 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | ||||| | || | |||||||||||||||||| | ||||||||||||||| | Sbjct 42235 TAGAGAGAGTTCTCTCGCGCCCCTTAGTATTCTCTACCTACCTACCTGTGTCGGTTTATG 42176 Query 246 GTA 248 ||| Sbjct 42175 GTA 42173 Score = 143 bits (158), Expect = 4e-32 Identities = 177/243 (73%), Gaps = 22/243 (9%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || ||| || | ||||| | ||| || |||| Sbjct 103255 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTAC-GACTTTGCGGAGACC 103313 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| | || || |||||||| | Sbjct 103314 TGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCT---------------G 103358 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 ||| | ||| || |||||||| ||||||||||||||||| |||||||| ||||| Sbjct 103359 ATGTT----ATCAG--GCGCCCCTTCTTCCGAAGTTACGGGGCCAGTTTGCCGAGTTCCT 103412 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | ||||| | || | |||||||||||||||||| | ||||||||||||||| | Sbjct 103413 TAGAGAGAGTTCTCTCGCGCCCCTTAGTATTCTCTACCTACCTACCTGTGTCGGTTTATG 103472 Query 246 GTA 248 ||| Sbjct 103473 GTA 103475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694354794560