Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq6720 253 5e-65 >seq6720 Length=135362 Score = 253 bits (280), Expect = 5e-65 Identities = 302/414 (73%), Gaps = 32/414 (8%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | || ||||||| ||||||| ||||||||||| |||||| Sbjct 42586 GCATCTTCACGGACAAGTCTATTTCACCGAGTCTCTCTCTGAGACAGCGCCCAGATCGTT 42527 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||| || | Sbjct 42526 ACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGGACTGTCA 42467 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT-------TAGCTAA 185 | ||||| ||||||||| |||||||||||| || |||||| | | | ||| Sbjct 42466 TAGTTACAGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCTCTTGTAAAACAAAATAA 42407 Query 186 CCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245 || | || |||||||||||| |||||||||||| ||| ||| | ||| || Sbjct 42406 CCAACTTCCTTCACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTACGAC 42347 Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCAT 305 ||||| ||| |||||||||| ||||||||||| |||||||| || ||||| | Sbjct 42346 TTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACC----T 42291 Query 306 GAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 365 || ||| ||| ||||| |||||| |||||||||||| ||| Sbjct 42290 GATGTTA-------------TCA--------GGCGCCCCTTCTTCCGAAGTTACGGGGCC 42252 Query 366 TTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||| |||||||| |||||||||| || |||| |||||||||||| Sbjct 42251 AGTTTGCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTAGTATTCTCTACC 42198 Score = 253 bits (280), Expect = 5e-65 Identities = 302/414 (73%), Gaps = 32/414 (8%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | || ||||||| ||||||| ||||||||||| |||||| Sbjct 103062 GCATCTTCACGGACAAGTCTATTTCACCGAGTCTCTCTCTGAGACAGCGCCCAGATCGTT 103121 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||| || | Sbjct 103122 ACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGGACTGTCA 103181 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT-------TAGCTAA 185 | ||||| ||||||||| |||||||||||| || |||||| | | | ||| Sbjct 103182 TAGTTACAGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCTCTTGTAAAACAAAATAA 103241 Query 186 CCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245 || | || |||||||||||| |||||||||||| ||| ||| | ||| || Sbjct 103242 CCAACTTCCTTCACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTACGAC 103301 Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCAT 305 ||||| ||| |||||||||| ||||||||||| |||||||| || ||||| | Sbjct 103302 TTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACC----T 103357 Query 306 GAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 365 || ||| ||| ||||| |||||| |||||||||||| ||| Sbjct 103358 GATGTTA-------------TCA--------GGCGCCCCTTCTTCCGAAGTTACGGGGCC 103396 Query 366 TTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||| |||||||| |||||||||| || |||| |||||||||||| Sbjct 103397 AGTTTGCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTAGTATTCTCTACC 103450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260715274240