Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq6720 369 1e-99 >seq6720 Length=135362 Score = 369 bits (408), Expect = 1e-99 Identities = 380/492 (77%), Gaps = 19/492 (4%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 39098 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGATTATGTGGTT 39157 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||||||||||||||||||| ||||||| | || | |||||||| Sbjct 39158 TAATTCGATGCAACGCGAAGAACCTTACCAGGGATTGACATACCGAGAACTTTCTAGAGA 39217 Query 127 TAGAGGTTTCCCCTTCGGGGGAC-AGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 |||| | || || || |||| ||||||| ||||||| |||||||||||||| Sbjct 39218 TAGATTGGTGCCTGAAAAGGAACTCGAGT-ACAGGTGGTGCATGGCTGTCGTCAGCTCGT 39276 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA 245 | |||||| ||| |||||||| |||||||||||||||||| ||| Sbjct 39277 GCCGTGAGGTGTATAGTTAAGTCTAGCAACGAGCGCAACCCTT-------GTT------- 39322 Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || |||| | ||||| ||||||||||| |||||||||||||| | ||| ||||| Sbjct 39323 TTTAGTT-AATATTCTAAAAAGACTGCCGGTG-TAAACCGGAGGAAGGAGAGGATGACGT 39380 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| ||| |||||||||||| |||||||||||||| |||||||| | |||| | Sbjct 39381 CAAGTCAGCATGCCCCTTATATCCTGGGCTACACACGTAATACAATGGCTGAGACAATCG 39440 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | ||| || |||||| |||| |||| |||| | ||||||||||||||||| | Sbjct 39441 GTAGCAAACTCGCGAGAGTAAGCCAATCTGCTAAACTCAGCCTCAGTTCGGATTGTAGGC 39500 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTG 484 ||||||||| ||| ||||||| ||||||||||||||||| ||||| || ||||| Sbjct 39501 TGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCTATATGGCGGTG 39560 Query 485 AATACGTTCCCG 496 |||||||||||| Sbjct 39561 AATACGTTCCCG 39572 Score = 369 bits (408), Expect = 1e-99 Identities = 380/492 (77%), Gaps = 19/492 (4%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 106550 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGATTATGTGGTT 106491 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||||||||||||||||||| ||||||| | || | |||||||| Sbjct 106490 TAATTCGATGCAACGCGAAGAACCTTACCAGGGATTGACATACCGAGAACTTTCTAGAGA 106431 Query 127 TAGAGGTTTCCCCTTCGGGGGAC-AGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 |||| | || || || |||| ||||||| ||||||| |||||||||||||| Sbjct 106430 TAGATTGGTGCCTGAAAAGGAACTCGAGT-ACAGGTGGTGCATGGCTGTCGTCAGCTCGT 106372 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA 245 | |||||| ||| |||||||| |||||||||||||||||| ||| Sbjct 106371 GCCGTGAGGTGTATAGTTAAGTCTAGCAACGAGCGCAACCCTT-------GTT------- 106326 Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || |||| | ||||| ||||||||||| |||||||||||||| | ||| ||||| Sbjct 106325 TTTAGTT-AATATTCTAAAAAGACTGCCGGTG-TAAACCGGAGGAAGGAGAGGATGACGT 106268 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| ||| |||||||||||| |||||||||||||| |||||||| | |||| | Sbjct 106267 CAAGTCAGCATGCCCCTTATATCCTGGGCTACACACGTAATACAATGGCTGAGACAATCG 106208 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | ||| || |||||| |||| |||| |||| | ||||||||||||||||| | Sbjct 106207 GTAGCAAACTCGCGAGAGTAAGCCAATCTGCTAAACTCAGCCTCAGTTCGGATTGTAGGC 106148 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTG 484 ||||||||| ||| ||||||| ||||||||||||||||| ||||| || ||||| Sbjct 106147 TGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCTATATGGCGGTG 106088 Query 485 AATACGTTCCCG 496 |||||||||||| Sbjct 106087 AATACGTTCCCG 106076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503898931200