Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2187 147 4e-33 seq6720 78.8 2e-12 >seq2187 Length=11887 Score = 147 bits (162), Expect = 4e-33 Identities = 81/81 (100%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8919 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 8860 Query 197 CAAGCCAGTTATCCCTGTGGT 217 ||||||||||||||||||||| Sbjct 8859 CAAGCCAGTTATCCCTGTGGT 8839 Score = 125 bits (138), Expect = 1e-26 Identities = 90/100 (90%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTC-ATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| ||||||| || || | || ||||| | |||||||||||||||||||||||| Sbjct 9237 TACTGAGCCGAATTACTAT-GGCGAGATCGGTCCAACAGTAGGGTAAAACTAACCTGTCT 9179 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 || ||||||||||||||||||||||||||||||||||||| Sbjct 9178 CACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 9139 Score = 95.1 bits (104), Expect = 2e-17 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 9854 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTC 9795 Score = 87.8 bits (96), Expect = 3e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 218 AACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACT 277 |||||||||| |||||||||| |||||| ||| | ||||||||||||||||||| || Sbjct 8438 AACTTTTCTGACACCTCTAGCATCAAATCCCGATAGGCTAAAGGATCGATAGGCCATGCT 8379 Query 278 TTCATGGTTTGTATTC 293 |||| |||||||||| Sbjct 8378 TTCACAGTTTGTATTC 8363 >seq6720 Length=135362 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 43154 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACC 43095 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | | || | | ||| || ||||||||||||| | |||| Sbjct 43094 CTTGGGACCTACTACAGCCCC---AGGATGTGATGAGCCGACATCGAGGTGCCAAACCTT 43038 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | |||| ||||||||| ||||||||| Sbjct 43037 CTCGTCGATGTGAACTCTTGGAGAAGATTAGCCTGTTATCCCTAGAGTAACTTTT 42983 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 102494 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACC 102553 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | | || | | ||| || ||||||||||||| | |||| Sbjct 102554 CTTGGGACCTACTACAGCCCC---AGGATGTGATGAGCCGACATCGAGGTGCCAAACCTT 102610 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | |||| ||||||||| ||||||||| Sbjct 102611 CTCGTCGATGTGAACTCTTGGAGAAGATTAGCCTGTTATCCCTAGAGTAACTTTT 102665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854342584320