Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq6720 197 3e-48 >seq6720 Length=135362 Score = 197 bits (218), Expect = 3e-48 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| |||| ||||||||| ||||||||| ||||| ||| |||||||||| || Sbjct 42775 GACAGTTTCAGATGGGCAGTTTTTCTGGGGCGGAAACCTCCTAAAAGGTAACGGAGGTGC 42834 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||| | | ||||||| |||| ||||| || | |||| ||||||||||||| | | Sbjct 42835 GCAATGGTTCCCTCAGTCTGGACGGAAATCAGACATTGAGTGTAAAGGCAAAAGGGAGCT 42894 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || ||| |||||| | ||||| |||||| ||| |||| ||||||| |||||| Sbjct 42895 TGACTGTGAGACCTACAAGTCAAACAGGGGCGAAAGCCGGCCTTAGTGATCCGACGGTGC 42954 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 42955 TGTGTGGAAAGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 43001 Score = 197 bits (218), Expect = 3e-48 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| |||| ||||||||| ||||||||| ||||| ||| |||||||||| || Sbjct 102873 GACAGTTTCAGATGGGCAGTTTTTCTGGGGCGGAAACCTCCTAAAAGGTAACGGAGGTGC 102814 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||| | | ||||||| |||| ||||| || | |||| ||||||||||||| | | Sbjct 102813 GCAATGGTTCCCTCAGTCTGGACGGAAATCAGACATTGAGTGTAAAGGCAAAAGGGAGCT 102754 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || ||| |||||| | ||||| |||||| ||| |||| ||||||| |||||| Sbjct 102753 TGACTGTGAGACCTACAAGTCAAACAGGGGCGAAAGCCGGCCTTAGTGATCCGACGGTGC 102694 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 102693 TGTGTGGAAAGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 102647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982333982720