Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq6720 91.5 2e-16 >seq6720 Length=135362 Score = 91.5 bits (100), Expect = 2e-16 Identities = 108/148 (73%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | | ||| || |||||||||| || | | ||||||| ||| Sbjct 42615 GGGTCTTTCTGTCCAAATGTTAGTAGTCCGCATCTTCACGGACAAGTCTATTTCACCGAG 42556 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||||||||| ||||||| || Sbjct 42555 -TCTCTCTCTGAGACAGCGCCCAGATCGTTACGCCTTTCGTGCAGGTCGAAACTTACTCG 42497 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGT 171 |||| |||||||||||||||||||| || Sbjct 42496 ACAATGAATTTCGCTACCTTAGGACTGT 42469 Score = 91.5 bits (100), Expect = 2e-16 Identities = 108/148 (73%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | | ||| || |||||||||| || | | ||||||| ||| Sbjct 103033 GGGTCTTTCTGTCCAAATGTTAGTAGTCCGCATCTTCACGGACAAGTCTATTTCACCGAG 103092 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||||||||| ||||||| || Sbjct 103093 -TCTCTCTCTGAGACAGCGCCCAGATCGTTACGCCTTTCGTGCAGGTCGAAACTTACTCG 103151 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGT 171 |||| |||||||||||||||||||| || Sbjct 103152 ACAATGAATTTCGCTACCTTAGGACTGT 103179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547164377280