Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq6720 224 2e-56 >seq6720 Length=135362 Score = 224 bits (248), Expect = 2e-56 Identities = 255/336 (76%), Gaps = 17/336 (5%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| |||| ||||||||| | ||||||| |||| || ||||||||||||||| Sbjct 38663 TTTACGATCCACGGACCTTCTTCCTT-CACGCGGTATTG-CTCCGTCAGGCTTTCGCCCA 38606 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 38605 TTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 38546 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA-CCTCA 180 ||| ||||||||||||||||||||| ||| |||||||||||||| ||| ||| || || Sbjct 38545 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGGAGGCCTTTACCCCCA 38486 Query 181 CCAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 239 |||||||||||||| ||| | || ||| ||| | || | | | || | Sbjct 38485 CCAACTAGCTAATCAGACGCAAGCCTC-TCTCTTGGC----------AGTTTTCACT--T 38439 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || | | | | |||| ||||||||| | |||||| | |||||||||||| | | Sbjct 38438 TTAGCTCCTCAGCATTATGGGGTATTAGCAACAGTTTCCCATTGTTATCCCCCACCAAAA 38379 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | ||| || || |||| |||||||||||| || Sbjct 38378 GGTAAGTTCTTACGCGTTACGCACCCGTCCGCCACT 38343 Score = 224 bits (248), Expect = 2e-56 Identities = 255/336 (76%), Gaps = 17/336 (5%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| |||| ||||||||| | ||||||| |||| || ||||||||||||||| Sbjct 106985 TTTACGATCCACGGACCTTCTTCCTT-CACGCGGTATTG-CTCCGTCAGGCTTTCGCCCA 107042 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 107043 TTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 107102 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA-CCTCA 180 ||| ||||||||||||||||||||| ||| |||||||||||||| ||| ||| || || Sbjct 107103 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGGAGGCCTTTACCCCCA 107162 Query 181 CCAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 239 |||||||||||||| ||| | || ||| ||| | || | | | || | Sbjct 107163 CCAACTAGCTAATCAGACGCAAGCCTC-TCTCTTGGC----------AGTTTTCACT--T 107209 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || | | | | |||| ||||||||| | |||||| | |||||||||||| | | Sbjct 107210 TTAGCTCCTCAGCATTATGGGGTATTAGCAACAGTTTCCCATTGTTATCCCCCACCAAAA 107269 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | ||| || || |||| |||||||||||| || Sbjct 107270 GGTAAGTTCTTACGCGTTACGCACCCGTCCGCCACT 107305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071927961600