Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq6720 251 3e-64 >seq6720 Length=135362 Score = 251 bits (278), Expect = 3e-64 Identities = 343/471 (73%), Gaps = 26/471 (6%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | | || |||||| |||| Sbjct 41385 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGAATTCGATTGGAATTTCT 41326 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| | | |||||||| | || ||||||| |||||| || Sbjct 41325 CCCCTAACCACAACTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTCCAATTGG 41266 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGT 313 | |||||| |||||| |||| |||||| ||||||| | |||||||| | | Sbjct 41265 TGTTACCCAAGCTTCATCCTGGCCATGGTTAGATCATCCAGGTTCGGGTCCATAAGAAAT 41206 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--CCCACACGGGTTAAC 371 | || |||| ||||||||| |||||||||||||| |||| | | | ||||| Sbjct 41205 GACA-TCAT--GCCCTATTCAGACTCGCTTTCGCTTGGGCTCCGGATCTTTCTCCTTAAC 41149 Query 372 CTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTA 430 | || || | | || |||| |||||||||||||| |||||||| |||| |||| Sbjct 41148 C---CGCCATTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GGTA 41095 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 | ||| |||| || | |||| ||| | ||||||| || |||||||||| Sbjct 41094 C----------TTTCCCCTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACT 41045 Query 491 CCCCGCCA-GGGGTACT-TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548 |||| | ||||| || ||||| |||||| |||| ||||| | |||||||||||||| Sbjct 41044 CCCCTTAAGGGGGTTCTCTTTCAACTTTCCATCACTGTACTATTTCGCTATCGGTCACCT 40985 Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 40984 AAGAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTCCA 40934 Score = 251 bits (278), Expect = 3e-64 Identities = 343/471 (73%), Gaps = 26/471 (6%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | | || |||||| |||| Sbjct 104263 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGAATTCGATTGGAATTTCT 104322 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| | | |||||||| | || ||||||| |||||| || Sbjct 104323 CCCCTAACCACAACTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTCCAATTGG 104382 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGT 313 | |||||| |||||| |||| |||||| ||||||| | |||||||| | | Sbjct 104383 TGTTACCCAAGCTTCATCCTGGCCATGGTTAGATCATCCAGGTTCGGGTCCATAAGAAAT 104442 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--CCCACACGGGTTAAC 371 | || |||| ||||||||| |||||||||||||| |||| | | | ||||| Sbjct 104443 GACA-TCAT--GCCCTATTCAGACTCGCTTTCGCTTGGGCTCCGGATCTTTCTCCTTAAC 104499 Query 372 CTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTA 430 | || || | | || |||| |||||||||||||| |||||||| |||| |||| Sbjct 104500 C---CGCCATTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GGTA 104553 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 | ||| |||| || | |||| ||| | ||||||| || |||||||||| Sbjct 104554 C----------TTTCCCCTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACT 104603 Query 491 CCCCGCCA-GGGGTACT-TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548 |||| | ||||| || ||||| |||||| |||| ||||| | |||||||||||||| Sbjct 104604 CCCCTTAAGGGGGTTCTCTTTCAACTTTCCATCACTGTACTATTTCGCTATCGGTCACCT 104663 Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 104664 AAGAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTCCA 104714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817477857280