Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq6720 174 4e-41 seq2187 75.2 3e-11 >seq6720 Length=135362 Score = 174 bits (192), Expect = 4e-41 Identities = 299/417 (72%), Gaps = 19/417 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| |||| | ||||||||| |||||||||| |||||| || || ||| Sbjct 41318 CCACAACTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGACCTCCAATTGGT-GTT 41262 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| |||| || |||||| || | || |||||| || | Sbjct 41261 ACCCAAGCTT-CATCCTGGCCAT-GGTTAGATCATCCAGGTT-CGGGTCCATAAGAAAT- 41206 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCC---CTATTCGGTTAAGCT 185 ||| | |||||| | ||||||||||| |||| | |||| || | |||| | Sbjct 41205 GACATCATGCCCTATTCAGACTCGCTTT-CGCTTGGGCTCCGGATCTTTCTCCTTAACCC 41147 Query 186 TTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAG 245 |||| | ||||||||| | | |||| | ||| ||| |||| |||| | Sbjct 41146 --GCCATTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGGTACTT--- 41092 Query 246 TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | |||||||||||||| ||||||||||||| | |||||||||||||||| |||| Sbjct 41091 TCCCCTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCCCTTAAGGGGG 41032 Query 306 TTCT-TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 |||| |||| |||||| |||| |||||| ||| |||||||||| | |||||||||| Sbjct 41031 TTCTCTTTCAACTTTCCATCACTGTACTATTTCGCTATCGGTCACCTAAGAGTATTTAGC 40972 Query 365 CTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| |||| |||||| | | ||||| || || | ||||| || | ||||||| Sbjct 40971 CTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 40916 Score = 174 bits (192), Expect = 4e-41 Identities = 299/417 (72%), Gaps = 19/417 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| |||| | ||||||||| |||||||||| |||||| || || ||| Sbjct 104330 CCACAACTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGACCTCCAATTGGT-GTT 104386 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| |||| || |||||| || | || |||||| || | Sbjct 104387 ACCCAAGCTT-CATCCTGGCCAT-GGTTAGATCATCCAGGTT-CGGGTCCATAAGAAAT- 104442 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCC---CTATTCGGTTAAGCT 185 ||| | |||||| | ||||||||||| |||| | |||| || | |||| | Sbjct 104443 GACATCATGCCCTATTCAGACTCGCTTT-CGCTTGGGCTCCGGATCTTTCTCCTTAACCC 104501 Query 186 TTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAG 245 |||| | ||||||||| | | |||| | ||| ||| |||| |||| | Sbjct 104502 --GCCATTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGGTACTT--- 104556 Query 246 TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | |||||||||||||| ||||||||||||| | |||||||||||||||| |||| Sbjct 104557 TCCCCTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCCCTTAAGGGGG 104616 Query 306 TTCT-TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 |||| |||| |||||| |||| |||||| ||| |||||||||| | |||||||||| Sbjct 104617 TTCTCTTTCAACTTTCCATCACTGTACTATTTCGCTATCGGTCACCTAAGAGTATTTAGC 104676 Query 365 CTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| |||| |||||| | | ||||| || || | ||||| || | ||||||| Sbjct 104677 CTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 104732 >seq2187 Length=11887 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| || |||||||||| Sbjct 4057 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCAGTATTTAGC 3998 Query 365 CTTGGA 370 ||| || Sbjct 3997 CTTAGA 3992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241516564480