Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq6720 188 1e-45 >seq6720 Length=135362 Score = 188 bits (208), Expect = 1e-45 Identities = 223/299 (75%), Gaps = 16/299 (5%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || || |||||||||||||||||||||||| Sbjct 38626 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCT 38567 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||||| || ||||| |||||||| Sbjct 38566 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGC 38507 Query 127 CTTGGTGGGCTATTA-TCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGAT 185 ||||| ||| ||| | ||||||||| |||||| | ||| |||| ||| | || Sbjct 38506 CTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTCTCTCTTGGC--- 38450 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 | | || | || ||||| | ||||||| ||||||||| ||||| Sbjct 38449 -AGTTTTCACTTTTAG---------CTCCTCAG-CATTATGGGGTATTAGCAACAGTTTC 38401 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | | ||||| || | | ||||| | ||| || ||| ||||| ||||||||||||||| Sbjct 38400 CCATTGTTATCCCCCACCAAAAGGTAAGTT-CTTACGCGTTACGCACCCGTCCGCCACT 38343 Score = 188 bits (208), Expect = 1e-45 Identities = 223/299 (75%), Gaps = 16/299 (5%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || || |||||||||||||||||||||||| Sbjct 107022 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCT 107081 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||||| || ||||| |||||||| Sbjct 107082 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGC 107141 Query 127 CTTGGTGGGCTATTA-TCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGAT 185 ||||| ||| ||| | ||||||||| |||||| | ||| |||| ||| | || Sbjct 107142 CTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTCTCTCTTGGC--- 107198 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 | | || | || ||||| | ||||||| ||||||||| ||||| Sbjct 107199 -AGTTTTCACTTTTAG---------CTCCTCAG-CATTATGGGGTATTAGCAACAGTTTC 107247 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | | ||||| || | | ||||| | ||| || ||| ||||| ||||||||||||||| Sbjct 107248 CCATTGTTATCCCCCACCAAAAGGTAAGTT-CTTACGCGTTACGCACCCGTCCGCCACT 107305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998332907520