Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq6720 219 1e-54 seq6719 91.5 3e-16 >seq6720 Length=135362 Score = 219 bits (242), Expect = 1e-54 Identities = 296/407 (73%), Gaps = 13/407 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||| |||||||||||||||| || ||||||||| ||| ||| | Sbjct 41925 CGACTACGCCGTTCGGCCTCGCCTTAGGTCCTGACTCACCCCCCATGGACGAACCTTGTG 41866 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 41865 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 41806 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC-ACTGACACG 178 |||||||||| || ||||| | ||| | || | |||||||| | || | Sbjct 41805 ACATTCTCACTTCCACACTGTCCACGA-ACACTTACGTGATCGCTTCACCCAATGT-AGA 41748 Query 179 ACGCTCCCCTACCCAACCAC-------ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 ||||||||||||| | | | | | ||||||||||||| || |||| Sbjct 41747 ACGCTCCCCTACCGATTCTTTTCATTAAAAAAATCCCACAGCTTCGGCAGACCGCTTAGT 41688 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||| || |||||||||||| | | ||| ||||||||||||||||||||||||| ||| Sbjct 41687 CCCGGC--CATTATCGGCGCAAGAACGCTTTACCAGTGAGCTATTACGCACTCTTTAAAG 41630 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| |||| |||||||||||||| | ||| |||||||||| ||||| Sbjct 41629 GGTGGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCAGCATTCTCACATCCTTTTCCACTT 41570 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||||||||||||| ||||||||||||||||||||| Sbjct 41569 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCT 41523 Score = 219 bits (242), Expect = 1e-54 Identities = 296/407 (73%), Gaps = 13/407 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||| |||||||||||||||| || ||||||||| ||| ||| | Sbjct 103723 CGACTACGCCGTTCGGCCTCGCCTTAGGTCCTGACTCACCCCCCATGGACGAACCTTGTG 103782 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 103783 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 103842 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC-ACTGACACG 178 |||||||||| || ||||| | ||| | || | |||||||| | || | Sbjct 103843 ACATTCTCACTTCCACACTGTCCACGA-ACACTTACGTGATCGCTTCACCCAATGT-AGA 103900 Query 179 ACGCTCCCCTACCCAACCAC-------ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 ||||||||||||| | | | | | ||||||||||||| || |||| Sbjct 103901 ACGCTCCCCTACCGATTCTTTTCATTAAAAAAATCCCACAGCTTCGGCAGACCGCTTAGT 103960 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||| || |||||||||||| | | ||| ||||||||||||||||||||||||| ||| Sbjct 103961 CCCGGC--CATTATCGGCGCAAGAACGCTTTACCAGTGAGCTATTACGCACTCTTTAAAG 104018 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| |||| |||||||||||||| | ||| |||||||||| ||||| Sbjct 104019 GGTGGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCAGCATTCTCACATCCTTTTCCACTT 104078 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||||||||||||| ||||||||||||||||||||| Sbjct 104079 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCT 104125 >seq6719 Length=93840 Score = 91.5 bits (100), Expect = 3e-16 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||||||||||| || ||| || |||||||||||||||| | || ||| |||| Sbjct 88708 CAGTGAGCTATTACGCTTTCATTCCAGACTGGCTGCTTCCAAGCCTATCTTCTGAGTGTC 88649 Query 325 TACGC-AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGC-TGATGATC 382 || || ||| || ||| | |||||||||| | |||||| ||||| | || | || Sbjct 88648 TATGCGAACAAAGCA-CCTATTCCACTGAGTCTGCGTTTAGGGACCTTAACGTGGTC-TC 88591 Query 383 TGGGCTGTTTCCCTCT 398 |||| ||||||||||| Sbjct 88590 TGGGTTGTTTCCCTCT 88575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177520865280