Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq6720 149 1e-33 >seq6720 Length=135362 Score = 149 bits (164), Expect = 1e-33 Identities = 209/291 (72%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||| ||| ||||| |||||| | | |||| | |||||||||||||||||| Sbjct 38983 CCCA-GCTATCGTCTCTCAGTGTCAGTCATGGCCCAGTAGAGCGCCTTCGCCACTGGTGT 38925 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || ||| ||| ||| ||||||||||||| |||| |||||||| | || || | || Sbjct 38924 TCTTCCTTATCTCTGTGCATTTCACCGCTCCACAAGGAATTCCCTCTACCCCTACCATAC 38865 Query 121 TCAAGAAAAACAGTT-TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 || || ||| || | ||| | ||||||| | | ||| ||| ||| Sbjct 38864 TCTAGCTTTTAAGTACTCCACTGCCTGTCCAAAGTTGAGCTCTGGGATTTGACAGTAGAC 38805 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || || |||||| | |||||| |||||| | |||||| || |||||| ||| Sbjct 38804 TTTAAAAACCACCTACAGACGCTTTACGCCCAATCATTCCGGACAATGCTTGCACCCTCT 38745 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||||||||||| ||| Sbjct 38744 GTATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTCAAGTA 38694 Score = 149 bits (164), Expect = 1e-33 Identities = 209/291 (72%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||| ||| ||||| |||||| | | |||| | |||||||||||||||||| Sbjct 106665 CCCA-GCTATCGTCTCTCAGTGTCAGTCATGGCCCAGTAGAGCGCCTTCGCCACTGGTGT 106723 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || ||| ||| ||| ||||||||||||| |||| |||||||| | || || | || Sbjct 106724 TCTTCCTTATCTCTGTGCATTTCACCGCTCCACAAGGAATTCCCTCTACCCCTACCATAC 106783 Query 121 TCAAGAAAAACAGTT-TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 || || ||| || | ||| | ||||||| | | ||| ||| ||| Sbjct 106784 TCTAGCTTTTAAGTACTCCACTGCCTGTCCAAAGTTGAGCTCTGGGATTTGACAGTAGAC 106843 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || || |||||| | |||||| |||||| | |||||| || |||||| ||| Sbjct 106844 TTTAAAAACCACCTACAGACGCTTTACGCCCAATCATTCCGGACAATGCTTGCACCCTCT 106903 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||||||||||| ||| Sbjct 106904 GTATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTCAAGTA 106954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828746045120