Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq6720 208 1e-51 seq6719 120 5e-25 >seq6720 Length=135362 Score = 208 bits (230), Expect = 1e-51 Identities = 209/265 (79%), Gaps = 10/265 (4%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||||| |||| | |||| | ||||| | |||| | | | |||| | Sbjct 43312 CTTAGATGCTTTCAGCGGTTATGCACTCCATGCGTAGCTACTCAGCGTTTCCTTTTGGAA 43253 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCA-TCCCGGTCCTCTCGTACTAAG---GACAGC 131 | ||||| | |||| ||| || || | | ||||||||||||||| | ||| | Sbjct 43252 AAAGAACTGATAGACCATAGGCATGATCACTACAGGTCCTCTCGTACTATGAGTGACTGA 43193 Query 132 TCCTCTCAAATTTCCTA-CGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 |||| ||| | ||| ||| || |||||| ||||||||||||||| |||||||||| Sbjct 43192 -CCTC---AATATTCTAGCGCTAACATCGGATATGGACCGAACTGTCTCACGACGTTCTG 43137 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||| Sbjct 43136 AACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTACAGC 43077 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| || |||||||||||| Sbjct 43076 CCCAGGATGTGATGAGCCGACATCG 43052 Score = 208 bits (230), Expect = 1e-51 Identities = 209/265 (79%), Gaps = 10/265 (4%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||||| |||| | |||| | ||||| | |||| | | | |||| | Sbjct 102336 CTTAGATGCTTTCAGCGGTTATGCACTCCATGCGTAGCTACTCAGCGTTTCCTTTTGGAA 102395 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCA-TCCCGGTCCTCTCGTACTAAG---GACAGC 131 | ||||| | |||| ||| || || | | ||||||||||||||| | ||| | Sbjct 102396 AAAGAACTGATAGACCATAGGCATGATCACTACAGGTCCTCTCGTACTATGAGTGACTG- 102454 Query 132 TCCTCTCAAATTTCCTA-CGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 |||| ||| | ||| ||| || |||||| ||||||||||||||| |||||||||| Sbjct 102455 ACCTC---AATATTCTAGCGCTAACATCGGATATGGACCGAACTGTCTCACGACGTTCTG 102511 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||| Sbjct 102512 AACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTACAGC 102571 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| || |||||||||||| Sbjct 102572 CCCAGGATGTGATGAGCCGACATCG 102596 >seq6719 Length=93840 Score = 120 bits (132), Expect = 5e-25 Identities = 190/265 (72%), Gaps = 23/265 (9%) Strand=Plus/Minus Query 20 AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTAC 79 ||||||||||||| || | ||||| ||||||| ||| || || ||| |||| | Sbjct 6723 AGATGCCTTCAGCGGTTCTGATGTCCAA-CTTAGCTGCCCGGCGAT--ACT--GCAGAAA 6669 Query 80 ----AACTGGTGCACCAGAGGTTTGTCCATC-CCGGTCCTCTCGTACTAAGGA--CAGCT 132 ||| ||| |||||||||| | | | |||||||||||||||| || | | Sbjct 6668 CAATAACCGGTAGACCAGAGGTTGGGACCCCTCCGGTCCTCTCGTACTGGGGGGTCTGAG 6609 Query 133 CCTC--TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 ||| || ||||| || || |||||| |||| |||||||| ||||| || Sbjct 6608 TCTCAGTCTAATTTA----GCACA-----GATAGGAACCGTACTGTCTCACGACGCACTA 6558 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 ||||||||||| |||| | |||| || ||||||| || |||||| |||||| || |||| Sbjct 6557 AACCCAGCTCGTGTGCTGCATTAAAGGACGAACAGTCCTACCCTTTGGACCTTCTGCAGC 6498 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 || |||| | || ||||||||||| Sbjct 6497 CCAAGGACGCAACAAGCCGACATCG 6473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780749169920