Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq6720 224 2e-56 >seq6720 Length=135362 Score = 224 bits (248), Expect = 2e-56 Identities = 244/319 (76%), Gaps = 15/319 (5%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 |||||||| | ||||||| || ||| | |||||||| ||||||||| | || ||||| || Sbjct 38648 CCTTCTTCCTTCACGCGGTATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCA 38589 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| Sbjct 38588 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 38529 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCCAACTAGCTAATCCCA 198 ||||||||||| ||||||||||| || |||| ||| |||| |||||||||||||| | Sbjct 38528 CAGACCAGCTACTGATCGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGA 38469 Query 199 -TCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTA 257 | | || || | || | || | | || || | || | | | ||| Sbjct 38468 CGCAAGCCTC-TC---TCTTG--------GCAGTTTTCACTTTTAGCTCCT-CAGCATTA 38422 Query 258 TGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACAT 317 || ||||||||| || |||||| | |||||||||| ||| ||| | ||| | | | Sbjct 38421 TGGGGTATTAGCAACAGTTTCCCATTGTTATCCCCCACCAAAAGGTAAGTTCTTACGCGT 38362 Query 318 TACTCACCCGTCCGCCACT 336 ||| ||||||||||||||| Sbjct 38361 TACGCACCCGTCCGCCACT 38343 Score = 224 bits (248), Expect = 2e-56 Identities = 244/319 (76%), Gaps = 15/319 (5%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 |||||||| | ||||||| || ||| | |||||||| ||||||||| | || ||||| || Sbjct 107000 CCTTCTTCCTTCACGCGGTATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCA 107059 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| Sbjct 107060 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 107119 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCCAACTAGCTAATCCCA 198 ||||||||||| ||||||||||| || |||| ||| |||| |||||||||||||| | Sbjct 107120 CAGACCAGCTACTGATCGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGA 107179 Query 199 -TCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTA 257 | | || || | || | || | | || || | || | | | ||| Sbjct 107180 CGCAAGCCTC-TC---TCTTG--------GCAGTTTTCACTTTTAGCTCCT-CAGCATTA 107226 Query 258 TGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACAT 317 || ||||||||| || |||||| | |||||||||| ||| ||| | ||| | | | Sbjct 107227 TGGGGTATTAGCAACAGTTTCCCATTGTTATCCCCCACCAAAAGGTAAGTTCTTACGCGT 107286 Query 318 TACTCACCCGTCCGCCACT 336 ||| ||||||||||||||| Sbjct 107287 TACGCACCCGTCCGCCACT 107305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222317854720