Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq6720 347 4e-93 >seq6720 Length=135362 Score = 347 bits (384), Expect = 4e-93 Identities = 285/343 (83%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||||||| || ||| ||| | |||||||||||||||||||| | Sbjct 38466 GCGTCTGATTAGCTAGTTGGTGGGGGTAAAGGCCTCCCAAGGCGACGATCAGTAGCTGGT 38525 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 38526 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 38585 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || | |||||||| ||||||||| | ||||| |||||||| || || Sbjct 38586 CAGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAAGGAAGA 38645 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||| | || ||||||| ||| | ||||||||||| |||||||||||||||||| Sbjct 38646 AGGTCCGTGGATCGTAAACTTCTTTTCTCAAGGAAGAATCAATGACGGTACTTGAGGAAT 38705 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||| |||| || ||| || |||| Sbjct 38706 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCATTGTCCG 38765 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || ||||||||||| | ||||| Sbjct 38766 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGTTTTTAAAGTC 38807 Score = 347 bits (384), Expect = 4e-93 Identities = 285/343 (83%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||||||| || ||| ||| | |||||||||||||||||||| | Sbjct 107182 GCGTCTGATTAGCTAGTTGGTGGGGGTAAAGGCCTCCCAAGGCGACGATCAGTAGCTGGT 107123 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 107122 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 107063 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || | |||||||| ||||||||| | ||||| |||||||| || || Sbjct 107062 CAGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAAGGAAGA 107003 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||| | || ||||||| ||| | ||||||||||| |||||||||||||||||| Sbjct 107002 AGGTCCGTGGATCGTAAACTTCTTTTCTCAAGGAAGAATCAATGACGGTACTTGAGGAAT 106943 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||| |||| || ||| || |||| Sbjct 106942 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCATTGTCCG 106883 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || ||||||||||| | ||||| Sbjct 106882 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGTTTTTAAAGTC 106841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497499361280