Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq6720 260 3e-67 >seq6720 Length=135362 Score = 260 bits (288), Expect = 3e-67 Identities = 305/409 (75%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 |||||||||| |||| |||||||||| |||||||||||||||||||||| |||| || Sbjct 38694 TACTTGAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGC 38753 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||| || |||||||| | ||||||||||| || ||||||||||| | ||||| || Sbjct 38754 AAGCATTGTCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGTTTTTAAAGTCTACTGT 38813 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAGAGTGCAGGAG 179 ||| | | ||||||| || || | || ||| | |||||||| | || Sbjct 38814 CAAATCCCAGAGCTCAACTTTGGACAGGCAGTGGAGTACTTAAAAGCTAGAGTATGGTAG 38873 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||| | ||||||||| ||| ||||||||||||| ||| || |||| ||||||||||| Sbjct 38874 GGGTAGAGGGAATTCCTTGTGGAGCGGTGAAATGCACAGAGATAAGGAAGAACACCAGTG 38933 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||||||| | |||| | | |||||||||||| ||| ||| ||||||| || | Sbjct 38934 GCGAAGGCGCTCTACTGGGCCATGACTGACACTGAGAGACGATAGCTGGGGGAGCGAAAA 38993 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA 359 |||||||||||||| ||||||| ||||||||||||| | |||| ||| | | | | Sbjct 38994 GGATTAGATACCCTTGTAGTCCCAGCCGTAAACGATGGACACTAAGTG-CTGTTTG---A 39049 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | |||| | ||| ||||| ||||| | || |||||| |||| Sbjct 39050 AG-----CAGTGCTGTAGCTAACGCGTTAAGTGTCCCGCCTGGGAAGTA 39093 Score = 260 bits (288), Expect = 3e-67 Identities = 305/409 (75%), Gaps = 10/409 (2%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 |||||||||| |||| |||||||||| |||||||||||||||||||||| |||| || Sbjct 106954 TACTTGAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGC 106895 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||| || |||||||| | ||||||||||| || ||||||||||| | ||||| || Sbjct 106894 AAGCATTGTCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGTTTTTAAAGTCTACTGT 106835 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAGAGTGCAGGAG 179 ||| | | ||||||| || || | || ||| | |||||||| | || Sbjct 106834 CAAATCCCAGAGCTCAACTTTGGACAGGCAGTGGAGTACTTAAAAGCTAGAGTATGGTAG 106775 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||| | ||||||||| ||| ||||||||||||| ||| || |||| ||||||||||| Sbjct 106774 GGGTAGAGGGAATTCCTTGTGGAGCGGTGAAATGCACAGAGATAAGGAAGAACACCAGTG 106715 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||||||| | |||| | | |||||||||||| ||| ||| ||||||| || | Sbjct 106714 GCGAAGGCGCTCTACTGGGCCATGACTGACACTGAGAGACGATAGCTGGGGGAGCGAAAA 106655 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA 359 |||||||||||||| ||||||| ||||||||||||| | |||| ||| | | | | Sbjct 106654 GGATTAGATACCCTTGTAGTCCCAGCCGTAAACGATGGACACTAAGTG-CTGTTTG---A 106599 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | |||| | ||| ||||| ||||| | || |||||| |||| Sbjct 106598 AG-----CAGTGCTGTAGCTAACGCGTTAAGTGTCCCGCCTGGGAAGTA 106555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203119144960