Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq6720 228 3e-57 >seq6720 Length=135362 Score = 228 bits (252), Expect = 3e-57 Identities = 382/539 (71%), Gaps = 24/539 (4%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | ||||||| ||||||||||||||||| | |||||||| ||||| Sbjct 41216 GACCCGAACCTGGATGATCTAACCATGGCCAGGATGAAGCTTGGGTAACACCAATTGGAG 41275 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||||||||| || |||||||||||| | ||||||| ||||| |||||| |||| | | Sbjct 41276 GTCCGAACCGACCGATGTTGAAAAATCGGCGGATGAGTTGTGGTTAGGGGAGAAATTCCA 41335 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCA 214 | | || | || |||||||||||| |||||| || ||| || || || | Sbjct 41336 ATCGAATTCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCGGTAACGATGA 41395 Query 215 CCA-TCG-GGGGTAGAGCACTGTTATGGCTAGGGGGTC--ATTGCGACTTACCAAACCAT 270 | || |||||||||||||||| | | || ||| | | ||| |||||| | | Sbjct 41396 GCTGTCTAGGGGTAGAGCACTGTT-TCGATACGGGCTGCGAAAGCGG--TACCAAGTCGT 41452 Query 271 TGCAAACTCCGAATGC---GCATCAGTTTTACCGCGGG--AGTGAGGGCATGGGTGCTAA 325 ||||||||||||| | |||| || || ||| |||||| |||| | ||| Sbjct 41453 GGCAAACTCCGAATACTAGGCAT-AGCCTT-CCGTAAACCAGTGAGACTGTGGGGGATAA 41510 Query 326 GGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTA 385 | | | | | ||||| || | || || | ||||||||||||| ||||||| |||| Sbjct 41511 GCTTCATAGTCAAGAGGGAAACAGCCCAGATCACCAGCTAAGGCCCCTAAATGACCGCTA 41570 Query 386 AGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCAT 445 ||| || || || || || |||| | ||| | |||| ||| |||| |||||||||| Sbjct 41571 AGTGGAA--AAGGATGTGAGAATGCTGAAACAACCAGGAGGTTTGCTTAGAAGCAGCCA- 41627 Query 446 TCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGG 505 | |||||||||||||||| |||||||| || || || ||| |||||| |||| Sbjct 41628 CCCTTTAAAGAGTGCGTAATAGCTCACTGGTAAAGCGTTCTTGCGCCGATAATGGCCGGG 41687 Query 506 TATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG------ATCGGTAGGGGAGC 558 | |||| |||| ||||||| ||||||| ||| ||| |||||||||||||| Sbjct 41688 -ACTAAGCGGTCTGCCGAAGCTGTGGGATTTTTTTAATGAAAAGAATCGGTAGGGGAGC 41745 Score = 228 bits (252), Expect = 3e-57 Identities = 382/539 (71%), Gaps = 24/539 (4%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | ||||||| ||||||||||||||||| | |||||||| ||||| Sbjct 104432 GACCCGAACCTGGATGATCTAACCATGGCCAGGATGAAGCTTGGGTAACACCAATTGGAG 104373 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||||||||| || |||||||||||| | ||||||| ||||| |||||| |||| | | Sbjct 104372 GTCCGAACCGACCGATGTTGAAAAATCGGCGGATGAGTTGTGGTTAGGGGAGAAATTCCA 104313 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCA 214 | | || | || |||||||||||| |||||| || ||| || || || | Sbjct 104312 ATCGAATTCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCGGTAACGATGA 104253 Query 215 CCA-TCG-GGGGTAGAGCACTGTTATGGCTAGGGGGTC--ATTGCGACTTACCAAACCAT 270 | || |||||||||||||||| | | || ||| | | ||| |||||| | | Sbjct 104252 GCTGTCTAGGGGTAGAGCACTGTT-TCGATACGGGCTGCGAAAGCGG--TACCAAGTCGT 104196 Query 271 TGCAAACTCCGAATGC---GCATCAGTTTTACCGCGGG--AGTGAGGGCATGGGTGCTAA 325 ||||||||||||| | |||| || || ||| |||||| |||| | ||| Sbjct 104195 GGCAAACTCCGAATACTAGGCAT-AGCCTT-CCGTAAACCAGTGAGACTGTGGGGGATAA 104138 Query 326 GGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTA 385 | | | | | ||||| || | || || | ||||||||||||| ||||||| |||| Sbjct 104137 GCTTCATAGTCAAGAGGGAAACAGCCCAGATCACCAGCTAAGGCCCCTAAATGACCGCTA 104078 Query 386 AGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCAT 445 ||| || || || || || |||| | ||| | |||| ||| |||| |||||||||| Sbjct 104077 AGTGGAA--AAGGATGTGAGAATGCTGAAACAACCAGGAGGTTTGCTTAGAAGCAGCCA- 104021 Query 446 TCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGG 505 | |||||||||||||||| |||||||| || || || ||| |||||| |||| Sbjct 104020 CCCTTTAAAGAGTGCGTAATAGCTCACTGGTAAAGCGTTCTTGCGCCGATAATGGCCGGG 103961 Query 506 TATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG------ATCGGTAGGGGAGC 558 | |||| |||| ||||||| ||||||| ||| ||| |||||||||||||| Sbjct 103960 -ACTAAGCGGTCTGCCGAAGCTGTGGGATTTTTTTAATGAAAAGAATCGGTAGGGGAGC 103903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689486458880