Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq6720 156 8e-36 >seq6720 Length=135362 Score = 156 bits (172), Expect = 8e-36 Identities = 186/249 (75%), Gaps = 9/249 (4%) Strand=Plus/Plus Query 4 GCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 63 ||| |||||||| ||| ||| || || ||||||||| || || | |||||| || Sbjct 40516 GCATATGGTGGAGACCTAGGCACCTAAAGACGATGAAGGGCGCAGATACCGGCGATACGC 40575 Query 64 TGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCT 123 | ||||||| |||| || | |||||||| ||||| |||||| ||| |||| || Sbjct 40576 TTCGGGGAGCTGGCAA-CAAGCATTGATCCGGAGATTCCCGAATAGGGCAACCT----CT 40630 Query 124 TTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACAT 182 | | | ||| ||||| ||||||| |||| || ||| | ||||| |||||||| Sbjct 40631 TAGA---ACTGCCCATTGAATTCATAGGTGGGCAAGAGGCAACTCAGCGAATTGAAACAT 40687 Query 183 CTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGG 242 || |||||||| ||||||||||| ||| | |||||||||||||| |||||||| ||||| Sbjct 40688 CTTAGTAGCTGAAGGAAAAGAAAGCAAAAGCGATTCCCAAAGTAGCGGCGAGCGGAATGG 40747 Query 243 GATGAGCCT 251 || ||||| Sbjct 40748 GAACAGCCT 40756 Score = 156 bits (172), Expect = 8e-36 Identities = 186/249 (75%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 4 GCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 63 ||| |||||||| ||| ||| || || ||||||||| || || | |||||| || Sbjct 105132 GCATATGGTGGAGACCTAGGCACCTAAAGACGATGAAGGGCGCAGATACCGGCGATACGC 105073 Query 64 TGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCT 123 | ||||||| |||| || | |||||||| ||||| |||||| ||| |||| || Sbjct 105072 TTCGGGGAGCTGGCAA-CAAGCATTGATCCGGAGATTCCCGAATAGGGCAACCT----CT 105018 Query 124 TTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACAT 182 | | | ||| ||||| ||||||| |||| || ||| | ||||| |||||||| Sbjct 105017 TAGA---ACTGCCCATTGAATTCATAGGTGGGCAAGAGGCAACTCAGCGAATTGAAACAT 104961 Query 183 CTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGG 242 || |||||||| ||||||||||| ||| | |||||||||||||| |||||||| ||||| Sbjct 104960 CTTAGTAGCTGAAGGAAAAGAAAGCAAAAGCGATTCCCAAAGTAGCGGCGAGCGGAATGG 104901 Query 243 GATGAGCCT 251 || ||||| Sbjct 104900 GAACAGCCT 104892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918338283520