Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2187 439 8e-121 >seq2187 Length=11887 Score = 439 bits (486), Expect = 8e-121 Identities = 358/428 (84%), Gaps = 10/428 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 8329 CTTTTGTTCTACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 8270 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 8269 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATC 8210 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAA-AATGGTCGGTGAAGACCAGT-TCCGCTTCATT 184 | | ||||| ||| || |||| || || | | || || | ||| | || Sbjct 8209 ATCGC-CGAAGCGATTTAGAGCTAGAAGAAGGGACAG---AGTCCCGCCTCCAAGTAATG 8154 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || |||||||| | || ||| || | ||||||||||| |||| | |||||| | Sbjct 8153 GAATAAGTAAACCAGCGCTAAAAGTTGGGGTATTTCACTGTTGCCGGA---GCTCCCCCA 8097 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| ||||||||| | | | |||||||||||||||||||||||||||||||||||||| Sbjct 8096 TATACTACACCTCCTAGGCTAGTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 8037 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 8036 TCTTTCCCCGCTGTTTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 7977 Query 365 TAGGGACAGT-GGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7976 TAGGGACAGTNGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 7917 Query 424 ATTTGGCT 431 |||||||| Sbjct 7916 ATTTGGCT 7909 Score = 118 bits (130), Expect = 3e-24 Identities = 65/65 (100%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7527 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 7468 Query 492 TTGAC 496 ||||| Sbjct 7467 TTGAC 7463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635090114560