Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq6720 188 2e-45 >seq6720 Length=135362 Score = 188 bits (208), Expect = 2e-45 Identities = 342/487 (70%), Gaps = 19/487 (4%) Strand=Plus/Minus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 |||||||| ||||| ||||||||||||||| ||| ||||||||| |||||| || Sbjct 42915 GACTTGTAGGTCTCACAGTCAAGCTCCCTTTTGCCTTTACACTCAATGTCTGATTTCCGT 42856 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 |||| ||||||||||| ||| || |||||||||| |||| ||||| ||||||||| Sbjct 42855 CCAGACTGAGGGAACCATTGCGCACCTCCGTTACCTTTTAGGAGGTTT-CCGCCCCAGAA 42797 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGG---GCCAAGGTTAGATATCC 178 ||||| |||| | | |||||| || ||| || || |||| ||||| || Sbjct 42796 AAACTGCCCATCTGAAACTGTCAAGCGTCCTGATTCAAGGATCGCCA---TTAGAATTCT 42740 Query 179 A--CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCA 236 | || | ||||||||| | ||| | | ||||| | | | | | ||| Sbjct 42739 AGCCTTCC--CAGAGTGGTCTCTCACTGATGGCTCCAATTTCCCCGGAAGGAAATCTTCA 42682 Query 237 TAGTCTCCCACCTATCCTACACAA--ACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 | |||||||||| || | ||| | || |||||| ||| | ||| || ||| || Sbjct 42681 ACGCCTCCCACCTAGACTGCGCAAGAAAAGC-CCGAATTCCATT-CCAGAATACAGTCAA 42624 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| |||| | | | ||||||| || | | ||| Sbjct 42623 GCTTCATAGGGTCTTTCTGTCCAAATGTTAGTAGTCCGCATCTTCACGGACAAGTCTATT 42564 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAA 412 |||||| | || | ||||||||| | || |||||||||| ||||||||||||| || Sbjct 42563 TCACCGAGTCTCTCTCTGAGACAGC-GCCCAGATCGTTACGCCTTTCGTGCAGGTCGAAA 42505 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 ||||| |||||| ||||||||||||||||||| || |||||||| |||||||| || | Sbjct 42504 CTTACTCGACAATGAATTTCGCTACCTTAGGACTGTCATAGTTACAGCCGCCGTTCACCG 42445 Query 473 GGGCTTC 479 ||||||| Sbjct 42444 GGGCTTC 42438 Score = 188 bits (208), Expect = 2e-45 Identities = 342/487 (70%), Gaps = 19/487 (4%) Strand=Plus/Plus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 |||||||| ||||| ||||||||||||||| ||| ||||||||| |||||| || Sbjct 102733 GACTTGTAGGTCTCACAGTCAAGCTCCCTTTTGCCTTTACACTCAATGTCTGATTTCCGT 102792 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 |||| ||||||||||| ||| || |||||||||| |||| ||||| ||||||||| Sbjct 102793 CCAGACTGAGGGAACCATTGCGCACCTCCGTTACCTTTTAGGAGGTTT-CCGCCCCAGAA 102851 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGG---GCCAAGGTTAGATATCC 178 ||||| |||| | | |||||| || ||| || || |||| ||||| || Sbjct 102852 AAACTGCCCATCTGAAACTGTCAAGCGTCCTGATTCAAGGATCGCCA---TTAGAATTCT 102908 Query 179 A--CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCA 236 | || | ||||||||| | ||| | | ||||| | | | | | ||| Sbjct 102909 AGCCTTCC--CAGAGTGGTCTCTCACTGATGGCTCCAATTTCCCCGGAAGGAAATCTTCA 102966 Query 237 TAGTCTCCCACCTATCCTACACAA--ACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 | |||||||||| || | ||| | || |||||| ||| | ||| || ||| || Sbjct 102967 ACGCCTCCCACCTAGACTGCGCAAGAAAAGC-CCGAATTCCATT-CCAGAATACAGTCAA 103024 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| |||| | | | ||||||| || | | ||| Sbjct 103025 GCTTCATAGGGTCTTTCTGTCCAAATGTTAGTAGTCCGCATCTTCACGGACAAGTCTATT 103084 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAA 412 |||||| | || | ||||||||| | || |||||||||| ||||||||||||| || Sbjct 103085 TCACCGAGTCTCTCTCTGAGACAGC-GCCCAGATCGTTACGCCTTTCGTGCAGGTCGAAA 103143 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 ||||| |||||| ||||||||||||||||||| || |||||||| |||||||| || | Sbjct 103144 CTTACTCGACAATGAATTTCGCTACCTTAGGACTGTCATAGTTACAGCCGCCGTTCACCG 103203 Query 473 GGGCTTC 479 ||||||| Sbjct 103204 GGGCTTC 103210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702285598720