Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq6720 167 5e-39 >seq6720 Length=135362 Score = 167 bits (184), Expect = 5e-39 Identities = 210/288 (73%), Gaps = 19/288 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| | | |||| || | Sbjct 38734 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTCAAGTACCGTCA------------T 38687 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || |||| | | ||||||||||||| |||| || ||||| |||||||||| Sbjct 38686 TGA-----TTCTTCCTTGAGAAAAGAAGTTTACGATCCACGGA-CCTTCTTCCTTCACGC 38633 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || |||||||||||||||||||||||| Sbjct 38632 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 38573 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 38572 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 38513 Query 241 CGTAGGCTAGGTGGGCCGTTA-CCCCGCCTACTACCTAATGGAACGCA 287 ||| | || || |||| ||| |||| || |||| ||||| ||||| Sbjct 38512 CGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCA 38465 Score = 167 bits (184), Expect = 5e-39 Identities = 210/288 (73%), Gaps = 19/288 (7%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| | | |||| || | Sbjct 106914 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTCAAGTACCGTCA------------T 106961 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || |||| | | ||||||||||||| |||| || ||||| |||||||||| Sbjct 106962 TGA-----TTCTTCCTTGAGAAAAGAAGTTTACGATCCACGGA-CCTTCTTCCTTCACGC 107015 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || |||||||||||||||||||||||| Sbjct 107016 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 107075 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 107076 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 107135 Query 241 CGTAGGCTAGGTGGGCCGTTA-CCCCGCCTACTACCTAATGGAACGCA 287 ||| | || || |||| ||| |||| || |||| ||||| ||||| Sbjct 107136 CGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCA 107183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068728176640