Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3912 123 2e-23 >seq3912 Length=5383 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGC 66415 |||||||||||||| || || || || || || |||||| | ||||| || |||||| Sbjct 960 ATCCAGAGGGCGTAAAACAGGTCACGCGCGCGCGCCTCCTCCTTCCCGTGGTTCTTGCGC 1019 Query 66416 AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCC 66475 | |||| ||| ||||| | ||| || ||||| || ||||||||||| || |||| |||| Sbjct 1020 AGCTCGATGAAGTCAAACACGTCCGCGTGCCAGGGCTCCAGGTAGATCGCAAACGCGCCC 1079 Query 66476 ATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 | || |||||||| || ||||| ||||||| Sbjct 1080 TTGCGCTTGCCGCCGCCCTGGTCCACGTAGC 1110 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 ||||||| || || || | || || |||||||| || || ||||||| || ||||| Sbjct 100 CACAAACCGCGGCAGCGCGATCGACGCCAGGTTGCACACCGCGGTCTCGTCGGGGGCGGT 159 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||||| ||||| ||||||||||| || ||| |||||||||| ||||| ||||| Sbjct 160 GTACTCCACAATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGATT 219 Query 66112 ACTCTTGCGATTGCATGCATCCT 66134 |||||||| ||||| | |||| Sbjct 220 GCTCTTGCGGTTGCACGAGTCCT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397535439180800