Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq6720 749 0.0 >seq6720 Length=135362 Score = 749 bits (830), Expect = 0.0 Identities = 753/973 (77%), Gaps = 4/973 (0%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 || || || ||| |||| || ||| | |||||| | || |||||||||||||||| | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCAC 188968 ||||||||| |||| | | || || ||||| ||||| ||| ||| |||| || | Sbjct 37334 ATGATCCCTT-GCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 37277 Query 188969 CCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACA 189028 | || ||||| || ||||| ||||| || || || ||||||| | | || || |||| Sbjct 37276 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 37217 Query 189029 ACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCA 189088 ||||||||||||||||| || ||||| |||| |||||||| ||||||||||||||||| | Sbjct 37216 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 37157 Query 189089 TCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAG 189148 | |||||||| || || | || |||||| | |||||||||||||||| |||| | | | Sbjct 37156 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 37097 Query 189149 TCTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACC 189208 | | ||||||| | | || | | ||||||||||||||||||||||| ||||||| Sbjct 37096 TTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 37037 Query 189209 GTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCG 189268 || | |||||||||||||||||||| |||||||||| || || || || || ||| | | Sbjct 37036 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTG 36977 Query 189269 CAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 189328 |||| || | |||| || | || ||||||||||||||||| | ||||| || |||| Sbjct 36976 CAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 36917 Query 189329 TCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 189388 || ||| || ||||||| |||| | || |||||||| ||||||||||| | ||||||| Sbjct 36916 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACC 36857 Query 189389 CCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATG 189448 | ||||||||| | || || || ||||| || ||||||||| | ||||| || ||||| | Sbjct 36856 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 36797 Query 189449 GTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATG 189508 ||||| | || || || ||| | | |||||||| ||||||| ||| || ||| | | Sbjct 36796 GTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAG 36737 Query 189509 GTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCG 189568 ||||||| ||||| ||||||||||| || ||||||||||| ||||| || || || || | Sbjct 36736 GTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTG 36677 Query 189569 GTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCG 189628 ||||| | ||||||||||| ||||| ||||||||||| |||||| | ||||||||| | | Sbjct 36676 GTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 36617 Query 189629 CTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCA 189688 |||| ||||| || | | || ||||| || || | || | || |||||||||| Sbjct 36616 CTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCA 36557 Query 189689 ACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACA 189748 || | || |||||||||||||| ||||| || ||||| ||||||||||| | |||| Sbjct 36556 ACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACA 36497 Query 189749 CATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACG 189808 | ||||| ||| | ||||||||||| | ||||||||||| ||||| || ||||||| Sbjct 36496 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 36437 Query 189809 CTCACAACTTCCC 189821 ||||||||||||| Sbjct 36436 CTCACAACTTCCC 36424 Score = 749 bits (830), Expect = 0.0 Identities = 753/973 (77%), Gaps = 4/973 (0%) Strand=Plus/Plus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 || || || ||| |||| || ||| | |||||| | || |||||||||||||||| | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCAC 188968 ||||||||| |||| | | || || ||||| ||||| ||| ||| |||| || | Sbjct 108314 ATGATCCCTT-GCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 108371 Query 188969 CCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACA 189028 | || ||||| || ||||| ||||| || || || ||||||| | | || || |||| Sbjct 108372 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 108431 Query 189029 ACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCA 189088 ||||||||||||||||| || ||||| |||| |||||||| ||||||||||||||||| | Sbjct 108432 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 108491 Query 189089 TCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAG 189148 | |||||||| || || | || |||||| | |||||||||||||||| |||| | | | Sbjct 108492 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 108551 Query 189149 TCTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACC 189208 | | ||||||| | | || | | ||||||||||||||||||||||| ||||||| Sbjct 108552 TTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 108611 Query 189209 GTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCG 189268 || | |||||||||||||||||||| |||||||||| || || || || || ||| | | Sbjct 108612 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTG 108671 Query 189269 CAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 189328 |||| || | |||| || | || ||||||||||||||||| | ||||| || |||| Sbjct 108672 CAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 108731 Query 189329 TCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 189388 || ||| || ||||||| |||| | || |||||||| ||||||||||| | ||||||| Sbjct 108732 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACC 108791 Query 189389 CCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATG 189448 | ||||||||| | || || || ||||| || ||||||||| | ||||| || ||||| | Sbjct 108792 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 108851 Query 189449 GTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATG 189508 ||||| | || || || ||| | | |||||||| ||||||| ||| || ||| | | Sbjct 108852 GTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAG 108911 Query 189509 GTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCG 189568 ||||||| ||||| ||||||||||| || ||||||||||| ||||| || || || || | Sbjct 108912 GTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTG 108971 Query 189569 GTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCG 189628 ||||| | ||||||||||| ||||| ||||||||||| |||||| | ||||||||| | | Sbjct 108972 GTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 109031 Query 189629 CTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCA 189688 |||| ||||| || | | || ||||| || || | || | || |||||||||| Sbjct 109032 CTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCA 109091 Query 189689 ACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACA 189748 || | || |||||||||||||| ||||| || ||||| ||||||||||| | |||| Sbjct 109092 ACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACA 109151 Query 189749 CATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACG 189808 | ||||| ||| | ||||||||||| | ||||||||||| ||||| || ||||||| Sbjct 109152 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 109211 Query 189809 CTCACAACTTCCC 189821 ||||||||||||| Sbjct 109212 CTCACAACTTCCC 109224 Score = 517 bits (572), Expect = 1e-141 Identities = 727/1020 (71%), Gaps = 8/1020 (1%) Strand=Plus/Plus Query 189984 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 190043 ||||||||| |||||||||| | | ||| || ||||| ||||| |||||||| Sbjct 121699 TGGTTTGACGATTGTGATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCA 121758 Query 190044 GGATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACG 190103 || | ||| | || || ||| ||| | ||| | ||||| ||| ||||||| || || Sbjct 121759 GGTCTTCTTTTATTACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACA 121818 Query 190104 TTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTT 190163 |||| ||| |||||||| || || | |||| | |||| | || ||| ||| || Sbjct 121819 TTTGTTACTTCTTGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTC 121878 Query 190164 CTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 190223 | || || || || || || || || | ||||| ||||||| | | | ||||| Sbjct 121879 TTAACTGCTGCAGTTTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGG 121938 Query 190224 GGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTT 190283 || |||||| ||||||| || || | ||| ||| | || || | ||| ||||| Sbjct 121939 GGACCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTT 121998 Query 190284 GTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCA 190343 || || || || || ||||| | | ||||||| || ||| | ||||| |||||| | ||| Sbjct 121999 GTAGCACTGCATGGTGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCA 122058 Query 190344 CGTCTCATCGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 190399 ||| || ||| | ||||| || || || ||||| ||||||| || || ||||| Sbjct 122059 CGT----TCAGTAAACTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGT 122114 Query 190400 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATC 190459 |||||| || ||| | || |||||| | |||||||| ||||||||||||| || Sbjct 122115 ATTTGTTTCTGTATTTTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAG 122174 Query 190460 CTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGAC 190519 || ||||| || || || ||||| || || | ||||| || || ||||| |||||||| Sbjct 122175 TTTTGGTGTTGCCGCTATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGAC 122234 Query 190520 GCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGC 190579 || ||||| |||||||||||||| ||||| ||| | | || | || ||| | | || Sbjct 122235 ACTTAACCCATTCCACATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGC 122294 Query 190580 AATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTT 190639 || ||||||| || ||||| |||||| | | ||||||||||| || ||||| || Sbjct 122295 TATTCATGGTGCTACAGTAGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATT 122354 Query 190640 TAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTT 190699 ||||| || |||| |||| ||||| || || || ||||| || || || | || Sbjct 122355 CCGTGCATTTAACCCTACGCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATT 122414 Query 190700 CTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 190759 |||||| ||||| |||||||| || || || || | ||||| || ||||||||| | Sbjct 122415 CTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTT 122474 Query 190760 CTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAA 190819 ||||||||||| | ||||| |||| ||| | || ||| || | ||| | ||||| || Sbjct 122475 ATTTGTTCCTGTGACAGGTCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAA 122534 Query 190820 CCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGA 190879 | | |||||||| ||||| || || |||||||| | || || ||||||||||| || || Sbjct 122535 CTTACGTGCTTACGACTTCGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGA 122594 Query 190880 GACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGT 190939 ||||| ||||| ||||| | ||| | ||||||||| | ||| | ||| |||| | Sbjct 122595 AACTTTCTACACTAAAAACCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACA 122654 Query 190940 TGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || || || || || || ||||| |||||||||||||| || | || |||||||| Sbjct 122655 AGACCAGCCACACGAACGCTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634026737280000