Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq6720 798 0.0 >seq6720 Length=135362 Score = 798 bits (884), Expect = 0.0 Identities = 764/974 (78%), Gaps = 6/974 (1%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 || || |||||| | ||||| || | || ||| | ||| ||||||||||||||||| | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTT-ATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| | || |||| || |||| || |||| | ||| | || ||||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTACA-TCTGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || ||||| ||||||||||| || ||| ||||||| | | || || ||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 ||||||||||||||| || | ||| | || |||||||| ||||||||||||||||| || Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||||||| ||| | || || ||| | ||||| ||||||||||||||| | |||| Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 160871 ATTTCACTTCCTGATCGGCAT--CTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTAC 160928 | |||||| | | || | | ||| ||||||||||| |||||||||||||| ||| Sbjct 37095 TTGCCACTTCTTATTAGGTGTTGCATCT--TACATGGGTCGTGAGTGGGAACTTTCTTAC 37038 Query 160929 CGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGT 160988 || | || ||||| || |||||||| ||||| || || || || || |||||||| | | Sbjct 37037 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACT 36978 Query 160989 GCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGT 161048 ||||||||| | |||| || |||| |||||||||||||||||||||||||| | ||| Sbjct 36977 GCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGT 36918 Query 161049 ATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCAC 161108 ||||||||||| |||||||||||| | || ||||| || || |||||||| | |||||| Sbjct 36917 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCAC 36858 Query 161109 CCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCAT 161168 || ||||||||||| |||||||||||||| || |||||||| | ||||| || ||||| Sbjct 36857 CCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCAC 36798 Query 161169 GGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTAT 161228 |||||| | || ||||| || | | |||||||| ||||| ||||| || ||| | Sbjct 36797 GGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAA 36738 Query 161229 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTC 161288 |||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct 36737 GGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTT 36678 Query 161289 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTC 161348 ||||| | |||||||||||||| || ||||||||||| ||||| || ||||||||| | Sbjct 36677 GGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 36618 Query 161349 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTC 161408 || || ||||| || || | || ||||||||||| | ||| | || || ||||||||| Sbjct 36617 GCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTC 36558 Query 161409 AACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAAC 161468 ||| | ||||| |||||||||||||| || | | ||| || || || | ||| Sbjct 36557 AACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAAC 36498 Query 161469 ACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAAT 161528 || ||||||||| | | || ||||||||| | |||||||||||||||||||| ||||| Sbjct 36497 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 36438 Query 161529 GCTCACAACTTCCC 161542 |||||||||||||| Sbjct 36437 GCTCACAACTTCCC 36424 Score = 798 bits (884), Expect = 0.0 Identities = 764/974 (78%), Gaps = 6/974 (1%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 || || |||||| | ||||| || | || ||| | ||| ||||||||||||||||| | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTT-ATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| | || |||| || |||| || |||| | ||| | || ||||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTACA-TCTGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || ||||| ||||||||||| || ||| ||||||| | | || || ||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 ||||||||||||||| || | ||| | || |||||||| ||||||||||||||||| || Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||||||| ||| | || || ||| | ||||| ||||||||||||||| | |||| Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 160871 ATTTCACTTCCTGATCGGCAT--CTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTAC 160928 | |||||| | | || | | ||| ||||||||||| |||||||||||||| ||| Sbjct 108553 TTGCCACTTCTTATTAGGTGTTGCATCT--TACATGGGTCGTGAGTGGGAACTTTCTTAC 108610 Query 160929 CGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGT 160988 || | || ||||| || |||||||| ||||| || || || || || |||||||| | | Sbjct 108611 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACT 108670 Query 160989 GCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGT 161048 ||||||||| | |||| || |||| |||||||||||||||||||||||||| | ||| Sbjct 108671 GCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGT 108730 Query 161049 ATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCAC 161108 ||||||||||| |||||||||||| | || ||||| || || |||||||| | |||||| Sbjct 108731 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCAC 108790 Query 161109 CCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCAT 161168 || ||||||||||| |||||||||||||| || |||||||| | ||||| || ||||| Sbjct 108791 CCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCAC 108850 Query 161169 GGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTAT 161228 |||||| | || ||||| || | | |||||||| ||||| ||||| || ||| | Sbjct 108851 GGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAA 108910 Query 161229 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTC 161288 |||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct 108911 GGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTT 108970 Query 161289 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTC 161348 ||||| | |||||||||||||| || ||||||||||| ||||| || ||||||||| | Sbjct 108971 GGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 109030 Query 161349 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTC 161408 || || ||||| || || | || ||||||||||| | ||| | || || ||||||||| Sbjct 109031 GCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTC 109090 Query 161409 AACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAAC 161468 ||| | ||||| |||||||||||||| || | | ||| || || || | ||| Sbjct 109091 AACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAAC 109150 Query 161469 ACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAAT 161528 || ||||||||| | | || ||||||||| | |||||||||||||||||||| ||||| Sbjct 109151 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 109210 Query 161529 GCTCACAACTTCCC 161542 |||||||||||||| Sbjct 109211 GCTCACAACTTCCC 109224 Score = 612 bits (678), Expect = 2e-170 Identities = 734/997 (74%), Gaps = 0/997 (0%) Strand=Plus/Plus Query 163916 AGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGC 163975 ||| || ||||| ||||| |||||||| || | ||| | || || ||| ||| |||| Sbjct 121731 AGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTACCTTGTGCGTATTTTGC 121790 Query 163976 AATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGC 164035 | | ||||| ||| ||||||| ||||| |||||||| ||||||||| || ||| | || Sbjct 121791 ATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGGTACACACATGGTTTAGC 121850 Query 164036 GTCTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGC 164095 || |||| | || ||| ||| ||| | || || || || || || || || | Sbjct 121851 AACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCGACTCCAGCAAACAG 121910 Query 164096 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTG 164155 ||||| ||||||| | | | ||||||| ||||| |||| || ||||| | | || Sbjct 121911 TATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAAGGTGACTTTACACGTTG 121970 Query 164156 GTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGG 164215 ||| ||| | || || | ||| ||||||| || | || || |||| | | | || || Sbjct 121971 GTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGTGCTTTTGGTTTAATTGG 122030 Query 164216 TTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTAT 164275 ||| ||| | || || ||||||||||||||| ||| | ||||| || || || || Sbjct 122031 TTTTATGTTACGTCAATTTGAAATTGCACGTTCAGTAAACTTACGTCCATATAACGCAAT 122090 Query 164276 TGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCA 164335 ||| ||||||| || |||||||| ||||| || || | || |||||| | || || Sbjct 122091 TGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTAATTTACCCTTTAGGTCA 122150 Query 164336 ATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTT 164395 |||| |||||||||| ||||| ||||| || || || || ||| | || |||| || Sbjct 122151 ATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATTTTCCGTTTTATCTTATT 122210 Query 164396 CCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCAT 164455 | ||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| || | Sbjct 122211 CTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGAGTTGCTGGTGT 122270 Query 164456 CCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGA 164515 | |||| ||||| | |||||||||||||||||||| ||||| |||||| | || || Sbjct 122271 TTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTAGAAAATACTCTTTTCGA 122330 Query 164516 AGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTA 164575 ||||||||| | || || ||| ||||| | ||||| |||| ||||| ||||| Sbjct 122331 AGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAACTTA 122390 Query 164576 CTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAA 164635 ||| ||||| || || || | |||||||| || ||||||||| | ||||| || || Sbjct 122391 CTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAA 122450 Query 164636 GCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTAT 164695 |||||||| |||||||||||| | ||||||||||| | || ||||||| | |||| Sbjct 122451 ACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTGCTAT 122510 Query 164696 TGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAG 164755 |||| | | ||| | || || || | |||||||| || || || || || |||||| | Sbjct 122511 TGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGATTCG 122570 Query 164756 AGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGG 164815 || || || ||||| |||||||| || ||||| || || ||| | || || |||||||| Sbjct 122571 TGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATGAAGG 122630 Query 164816 ACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGA 164875 ||||||| ||||||||| || |||||||||||||||| || ||||| ||||| || Sbjct 122631 TATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAGAAGA 122690 Query 164876 AGTTCTTCCGAGAGGTAACGCACTCTAAACTTTTAAT 164912 ||| | || | |||||||| || |||| ||||||| Sbjct 122691 AGTATTACCTCGTGGTAACGCTCTATAAATTTTTAAT 122727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559281016448000