Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3198 147 7e-33 seq1324 107 6e-21 seq978 86.0 2e-14 >seq3198 Length=6291 Score = 147 bits (162), Expect = 7e-33 Identities = 172/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 257 ACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCAT 316 ||||||| | ||||||||||| | || ||||||||| |||| ||||||| || |||| Sbjct 5196 ACTCTAATTCTACTGCCGGTGATAGACTGGAGGAAGGGAGGGATCACGTCAAGTCCTCAT 5137 Query 317 GCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACC 376 | ||||||||| ||||||||||||||| |||||||| | ||||| | || | Sbjct 5136 GACCCTTATGAACTGGGCTACACACGTGTTACAATGGTGAGCACAAAAAGTTGCAATGAT 5077 Query 377 GCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGAC 436 | || ||| ||| | ||||| | || |||| |||||| ||||||| |||| Sbjct 5076 GTGAATCGGAGCGAAT-CTATAAAACTCACCTGTGTTCAGATTGTTCTCTGCAATTCGAG 5018 Query 437 TATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 | ||||||| |||||| |||||||||| |||||||| || |||||||| Sbjct 5017 AACATGAAGCCGGAATCACTAGTAATCGCGGATCAGCACGCCGCGGTGAAT 4967 Score = 122 bits (134), Expect = 3e-25 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| | |||||||||||||| ||||||| | | |||||| |||||| ||| Sbjct 5568 TACGGTCGCAAGACTAAAACTCAAAGGAATAGACGGGGGCTCACACAAGTGGTGGAACAT 5509 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 ||||||||||||||| ||||||| | |||||||||| ||||||||| Sbjct 5508 GTGGTTTAATTCGAAACAACGCGCAAAACCTTACCAGTTCTTGACAT 5462 Score = 87.8 bits (96), Expect = 5e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| |||||||||||||||| |||||||||||| |||| | || ||| Sbjct 5385 ACAGGTGTTGCATGGCTGTCGTCAGCTCGTGTTGTGAGATGTTGGATTAATTTCCTTAAC 5326 Query 216 GAGCGCAACCC 226 ||||| ||||| Sbjct 5325 GAGCGAAACCC 5315 >seq1324 Length=5427 Score = 107 bits (118), Expect = 6e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 16 GAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAA 75 ||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||| Sbjct 630 GAAACTCAAAGGAATTGACGGGGGCCCGCACACGCGGTGGAGCATGTGGCTCGGTTCGAT 689 Query 76 GCAACGCGAAGAACCTTAC 94 |||||| |||||||||||| Sbjct 690 GCAACGTGAAGAACCTTAC 708 >seq978 Length=20794 Score = 86.0 bits (94), Expect = 2e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||||||||||||| ||||||| | | |||||| |||||| ||||||||| Sbjct 11749 CGCAAGACTAAAACTCAAAGGAATAGACGGGGGCTCACACAAGTGGTGGAACATGTGGTT 11690 Query 67 TAATTCGAAG 76 |||||||||| Sbjct 11689 TAATTCGAAG 11680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503945088960