Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq3436 284 4e-74 seq3198 114 5e-23 >seq3436 Length=2517 Score = 284 bits (314), Expect = 4e-74 Identities = 348/471 (74%), Gaps = 23/471 (5%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | |||| |||||| ||||| Sbjct 1674 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCCGAGTTCGATTGGTATTTCA 1615 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 || ||| ||||| |||||| | | |||||||| | || ||||||| ||| |||| || Sbjct 1614 CCGCTAACCACAACTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTTCACGTGG 1555 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTG--ATCGT 313 | |||||| |||||| |||| ||||| |||||||| | ||||||||| | | || Sbjct 1554 TGTTACCCAAGCTTCATCCTGGTCATGGTTAGATCACCCGGGTTCGGGTCTAGAAAAAGT 1495 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCT 373 | | | | |||||||||| |||| ||||||||| |||| || | | |||| ||| Sbjct 1494 GACCTTTAAGCGCCCTATTCAGACTTGCTTTCGCTCTGGCT-CCGGATA---GTTATCCT 1439 Query 374 ----CGCGACACAAC-GCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGG 428 | | ||| | | || |||| |||||||||||||| |||||||| |||| | Sbjct 1438 TAACCAAGCCACTTCTTCTAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GA 1382 Query 429 TACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCA 488 || || |||| || | ||| || | ||||||| || || ||||| Sbjct 1381 TA---------TTGTTATCCTCCCACTGTTTGAGAGCGTAGGGTTTCATGTTCTTTTTCA 1331 Query 489 CTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548 |||||| ||||||| |||||||||||||||||||||||||| | | |||||||||||| Sbjct 1330 CTCCCCTACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTTTTTCACTATCGGTCACCT 1271 Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||||| |||| |||||||| | |||||||||| |||||| Sbjct 1270 AGGAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTTCA 1220 >seq3198 Length=6291 Score = 114 bits (126), Expect = 5e-23 Identities = 180/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCC-CCCTAGACCATCCAGTGCT 111 || ||||||||||| ||| || ||||| | |||||| |||| ||| | |||||| Sbjct 1741 GGTATTCGGAGTTTCTTTGGGGTCAGTAAGGCTTTGGGCCACCCTCACCCAACGAGTGCT 1682 Query 112 CTACCTCCGGGAAGAAACACGCG-ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 ||||| || | | | ||||| |||| ||| |||||| || |||||||| Sbjct 1681 CTACCCCCTTTATAATTTTGTTGTACGCTCTACCTCAATAGATTTCGCAGAAAACCAGCT 1622 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACC 230 ||| | |||| ||||||| ||||||||||| |||| |||||| || || | || Sbjct 1621 ATCTCCGAGTTCGATTGGCTTTTCACCCCTAATCACAAGTCATCTCCGTCTATTGCCACA 1562 Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 | ||| ||||||||||||| || ||| | |||||||||| |||| |||||| Sbjct 1561 GACGTGAGTTCGGTCCTCCAAAACGTGTTATCGTTTTTTCAACCTGCTCATGACTAGATC 1502 Query 291 ACTTCGCTTCGGGTC 305 ||| | |||||||| Sbjct 1501 ACTCGGTTTCGGGTC 1487 Score = 100 bits (110), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 389 ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT-ACCTAAAAGGCACTTCAG 447 |||||| | | |||| | ||||||| ||||||| || | | | | | | | || Sbjct 1334 ACTCGCTGACCCATTATGCAAAAGGTACGCCGTTACTTTTTTATCATATATATAAAAAAG 1275 Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGG-TACTATTTCACTCCCCGCC-AGGGGTAC 505 |||| || | |||| || ||||||||| | || |||||||||| |||||| Sbjct 1274 CTCCAACTGCTTGTCTACATTCGGTTTCAGGATTCTTTTTCACTCCCTATTTAGGGGTCT 1215 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTAT--TTAGGCT 563 ||||||||||||||||||||||||||| | |||||| ||| || || ||| ||||||| Sbjct 1214 TTTTCACCTTTCCCTCACGGTACTTGTGCACTATCGATCA--AAAGATTATACTTAGGCT 1157 Query 564 TAACGGGTGGTCCCGCCAGATTCACAC 590 || |||||||||| | | |||| || Sbjct 1156 TAGAGGGTGGTCCCCCTATTTTCAAAC 1130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817533639424