Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3436 176 1e-41 seq3198 131 4e-28 >seq3436 Length=2517 Score = 176 bits (194), Expect = 1e-41 Identities = 304/422 (72%), Gaps = 26/422 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| |||| | ||||||||| |||||||||| ||| || | || ||| Sbjct 1607 CCACAACTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGACCTTCACGTGGT-GTT 1551 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| || |||||| ||||| || |||||||| || Sbjct 1550 ACCCAAGCTT-CATCCTGGTCAT-GGTTAGATCACCCGGGTT-CGGGTCTAGAAAA-AGT 1495 Query 129 GAC---TAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCT 185 ||| || ||||||| | ||||| ||||| |||| | |||| || |||| || Sbjct 1494 GACCTTTAAGCGCCCTATTCAGACTTGCTTT-CGCTCTGGCTCCGG-ATA--GTTATCCT 1439 Query 186 TT-----GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAA 240 | |||||| |||||||| | | |||| | ||| ||| |||| |||| | Sbjct 1438 TAACCAAGCCACTTCTTCTAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG---A 1382 Query 241 CAAAGTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCT 299 | || | |||||||| ||| || || ||||||| | ||| |||||||||||| Sbjct 1381 TATTGTTATCCTCCCACTGTTTGAGAGCGTAGGGTTTCATGTTCTTTTTCACTCCCCTA- 1323 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 | |||||||||||| |||||||||||||||||| |||||||||||||| || ||||| Sbjct 1322 CAGGGGTTCTTTTCACCTTTCCCTCACGGTACTTTTTCACTATCGGTCACCTAGGAGTAT 1263 Query 360 TTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||| |||| |||||| | | ||||| || |||| ||||| || | ||||| Sbjct 1262 TTAGCCTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTTCACGTGCCCCATGCTACT 1204 Query 419 CG 420 || Sbjct 1203 CG 1202 >seq3198 Length=6291 Score = 131 bits (144), Expect = 4e-28 Identities = 161/219 (74%), Gaps = 16/219 (7%) Strand=Plus/Minus Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCC----AACA-------AAGTGGGCT 251 ||||||||||||||| |||||||||||| || || | || || ||| Sbjct 1332 TCGCTGACCCATTATGCAAAAGGTACGCCGTTACTTTTTTATCATATATATAAAAAAGCT 1273 Query 252 CCCACTGCTTGTACGCATACGGTTTCAGGAT-CTATTTCACTCCCCTCTCCGGGGTTCTT 310 || ||||||||| ||| |||||||||||| || |||||||||| | ||||| || Sbjct 1272 CCAACTGCTTGTCTACATTCGGTTTCAGGATTCTTTTTCACTCCCTATTTAGGGGTCTTT 1213 Query 311 TTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| |||||||||||||||||| || |||||||| ||| | || |||| ||| || Sbjct 1212 TTCACCTTTCCCTCACGGTACTTGTGCACTATCGATCAAAAGATTATACTTAGGCTTAGA 1153 Query 371 GGATGGTCCCCCCATATTCAGACA----AAGTTTCTCGT 405 || ||||||||| || |||| ||| || |||||||| Sbjct 1152 GGGTGGTCCCCCTATTTTCAAACAAGTTAATTTTCTCGT 1114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241554669184