Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq3436 172 1e-40 seq3198 154 3e-35 seq515 73.4 9e-11 >seq3436 Length=2517 Score = 172 bits (190), Expect = 1e-40 Identities = 154/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| | | ||| ||| | ||||| ||||||| | | || |||| Sbjct 1999 CCACAGCTTCGGCAGGTCGTTTAGTCCCGG--ACATTTTCGGCGCAAGAACGCTCCACCA 1942 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||| |||| |||||||||| |||| |||||||||||||| | Sbjct 1941 GTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAAGCAAACCTCCTGGTTGTTTC 1882 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| ||| |||||| ||||| | |||| || ||||||||||||| ||||||||| Sbjct 1881 AGCATTCTCACCTCCTTTGCCACTTAACGACCATTTTGGGGCCTTAGCTGGTGATCTGGG 1822 Query 387 CTGTTTCCCTCT 398 |||||||||||| Sbjct 1821 CTGTTTCCCTCT 1810 >seq3198 Length=6291 Score = 154 bits (170), Expect = 3e-35 Identities = 150/191 (79%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC--GGAATCACTTGACCAGTG 269 ||||||| | ||||||| ||| ||| |||||| |||| || | || || | |||||||| Sbjct 1977 GCTTCGGTGAATAACTTGAGCTCCGTTACATTTTCGGTGCTAGTAAGCA-TAGACCAGTG 1919 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 ||||||||||| |||| ||||||||||||||||||||| ||||||||||||| | ||| Sbjct 1918 AGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCTACCTCCTGGTTGTTTTCGC 1859 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 || |||||| ||||| ||| ||| || ||||||| ||||||||||| Sbjct 1858 CCAATAACTTCCTTTACCACTCAGTTCTTGCTTTGGAACCTTAGCGTGCGATCTGGGCTG 1799 Query 390 TTTCCCTCTCG 400 ||||||||||| Sbjct 1798 TTTCCCTCTCG 1788 >seq515 Length=24803 Score = 73.4 bits (80), Expect = 9e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||||||||||||| || || |||| ||||| |||||| |||||||| |||||||| Sbjct 17802 CTGGACCAGTGAGCTACTATGCTTTCTTGAAAGGAGGGCTGCCTCCAAGCCTACCTCCTG 17743 Query 319 GTTGT 323 ||||| Sbjct 17742 GTTGT 17738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177557005824