Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq3544 688 0.0 seq3157 399 2e-106 seq3158 111 2e-19 >seq3544 Length=2542 Score = 688 bits (762), Expect = 0.0 Identities = 709/925 (77%), Gaps = 2/925 (0%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 || || |||||| | ||| || | ||||| | || |||||||||| || || | Sbjct 1611 TTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTA 1670 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 ||||| || ||| | || ||||||||| ||| || || | | || || ||||| || Sbjct 1671 ATGATTCCTACTTTATTAACAGCAACTA-CTGTATTTATTATTGGTTTTATTGCTGCACC 1729 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 ||||| || || ||||| |||||||| || || | ||||| | | ||||||||||| Sbjct 1730 TCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAA 1789 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 ||| || ||||||| || |||| |||| || || |||||| | |||||||| || || Sbjct 1790 CATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAAT 1849 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| || || | ||||| ||| | |||||||||||||||| |||| | | || Sbjct 1850 TTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGT 1909 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | ||| || | ||||| || | || ||||||||||||||||||||||| |||| ||| Sbjct 1910 TTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCG 1969 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 | | ||||||||||| |||||| ||| || || || ||||| || ||||||||| ||| Sbjct 1970 TTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGC 2029 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 ||||||| | | ||||| ||||||| |||||||| || |||| ||||||| | ||||| Sbjct 2030 TGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTAT 2089 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 ||||||||||| || | ||| ||||||||||||||||||| || ||||||||||| || Sbjct 2090 TTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCC 2149 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 ||||||||||| ||||||||||| ||||| ||||| || | || |||||||||||||| Sbjct 2150 ATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGG 2209 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || | || |||||| ||| | | || || || |||| || || ||| ||| Sbjct 2210 TTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGG 2269 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 |||||| ||||||||||| ||||| |||||||||||||| ||||| || ||||||||||| Sbjct 2270 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGG 2329 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 |||||| || ||||||||||| || ||||||||||| || || | |||||||| | || Sbjct 2330 TCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGC 2389 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 ||||||||||||||| | || ||||||||||| | ||| |||| || |||||||| || Sbjct 2390 TGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 2449 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 | || || |||||||||||||| || | | || ||||| | || | ||||| Sbjct 2450 CTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACAC 2509 Query 160702 TTGGGCAGACGTGCTTAACCGCGCT 160726 |||||| ||| | ||||||| ||| Sbjct 2510 TTGGGCTGACATTATTAACCGTGCT 2534 >seq3157 Length=2513 Score = 399 bits (442), Expect = 2e-106 Identities = 623/886 (70%), Gaps = 16/886 (2%) Strand=Plus/Plus Query 161509 GGGTGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGG 161568 || ||||| || | ||||||| ||||| || || || || || || || || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 161569 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACG 161628 ||||| | | ||||| || |||||||||||||| |||| | ||| |||| || || Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 161629 ACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAAT 161688 || || | || |||||||| |||||| | ||||| || ||| | || ||| ||| Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 161689 TTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CT 161747 ||| | || ||||||||| || |||||| | ||||||||||||| || || || || Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCT-TTATTATTCCT 1872 Query 161748 CTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAA 161807 ||||||||||| || ||||| ||||| | ||| ||| | || || || ||| Sbjct 1873 TTGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGC 1932 Query 161808 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACT 161867 |||| || || || || | || | ||| ||||| || ||||||||||| |||||| | Sbjct 1933 TTTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAAT 1992 Query 161868 TGCTCGTCTTATCGGT----ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTG 161923 ||| ||| || || || |||||||| || || ||||| || || | || |||| Sbjct 1993 TGCACGT----TCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTG 2048 Query 161924 CTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGC 161983 || ||||||| || || | || || || | || || || ||||| || || | Sbjct 2049 CTCTTTTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCAC 2108 Query 161984 CATCGTTTGGGGTTGCCGCTATTTTCAGGTTC---TTACTTTTCCTACAAGGTTTCCACA 162040 | ||||| ||||| || || ||| | ||| ||| ||||| |||||||| || | Sbjct 2109 CTAGTTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTC---CAAGGTTTTCATA 2165 Query 162041 ATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGC 162100 | ||||| | ||||| || || ||||||||||| || ||| | || ||||| || | | Sbjct 2166 ACTGGACATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTC 2225 Query 162101 TCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAA 162160 | ||||| ||||| |||| || || ||||| || || | ||||||| || || | Sbjct 2226 TTTCTGCAATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTA 2285 Query 162161 ATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGA 162220 |||||||| |||||| || | || |||| || || || || || | || || || | Sbjct 2286 ATACTTTCCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAA 2345 Query 162221 ACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCT 162280 | ||||| ||||| || || || ||| | |||||| |||||| |||||||| || |||| Sbjct 2346 ATCGTTTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCT 2405 Query 162281 TTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCG 162340 ||||| | |||||||| || | ||||| |||| ||| |||| ||| | |||| | | Sbjct 2406 TTATGTTGTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAG 2465 Query 162341 CTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGC 162386 | | ||| | ||||| || || || ||||| || || |||||||| Sbjct 2466 CATTAAATTTACGTGCATATGATTTCGTATCACAAGAAATTCGTGC 2511 >seq3158 Length=11629 Score = 111 bits (122), Expect = 2e-19 Identities = 113/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 162391 GAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGT 162450 || ||||||||||||||||| ||||| || || ||||| || || ||||| ||| ||||| Sbjct 2 GAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCGT 61 Query 162451 GCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTG 162510 || ||| |||| | || ||||| ||||| || |||||||||||||||| ||| | Sbjct 62 GCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTA 121 Query 162511 CCTAGAGGTAACGCACTGTGAATGGT 162536 || | || ||||| || | |||||| Sbjct 122 CCACGTGGAAACGCTCT-TTAATGGT 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551350836577800