Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3544 637 6e-178 seq3157 453 1e-122 >seq3544 Length=2542 Score = 637 bits (706), Expect = 6e-178 Identities = 690/912 (76%), Gaps = 2/912 (0%) Strand=Plus/Plus Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCT 188931 ||| | |||||| | || |||||||||| ||||| | ||||| ||||| | | | Sbjct 1632 ACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTAATGATTCCTACTTTATTAACA 1691 Query 188932 GCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCAT 188990 ||||| | ||| || || | | ||| | |||||||| |||||||| |||||||| || Sbjct 1692 GCAACTA-CTGTATTTATTATTGGTTTTATTGCTGCACCTCCTGTAGATATTGATGGTAT 1750 Query 188991 CCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGT 189050 ||| || || || | ||||| | | || || |||||||| || |||||||| || | Sbjct 1751 CCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAACATTATTACTGGTGCTATTAT 1810 Query 189051 CCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGA 189110 ||| | || || || |||||| | ||||||||||| || |||||||| || ||| | || Sbjct 1811 TCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGA 1870 Query 189111 TGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCAT 189170 || ||| | || ||||||||||||| |||| | | || | ||| || ||||||| || Sbjct 1871 CGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGTTTGCCATTTTATCATCGGTAT 1930 Query 189171 CTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGAT 189230 | ||| || |||||||||||||||||||| |||| |||| | ||||||||||||||||| Sbjct 1931 TTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGAT 1990 Query 189231 CTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTT 189290 | | ||||| || || ||||| || || || || || || | | || ||| | Sbjct 1991 CGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTAT 2050 Query 189291 TGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACAT 189350 |||||||||||||| ||||| | ||||| || ||||| ||| || ||||| | ||| Sbjct 2051 CGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCAT 2110 Query 189351 GCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGC 189410 | |||| ||||||||||| || |||||||| |||||||| ||||||||||| || || || Sbjct 2111 GATTGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGC 2170 Query 189411 AGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACT 189470 ||||| || ||||||||| | || || || |||||||||||| | || || ||||| || Sbjct 2171 TGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCT 2230 Query 189471 GGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGA 189530 |||||||||| ||||||| ||| || ||| ||||||||| || || |||||||| Sbjct 2231 TATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGA 2290 Query 189531 AGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGC 189590 |||||| |||||||||||||| ||||| || || ||||||||| | || ||||||||||| Sbjct 2291 AGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGC 2350 Query 189591 ATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTAT 189650 || || |||||||| |||||| | |||||||| | ||||| ||||| || || |||| Sbjct 2351 TTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTAT 2410 Query 189651 CTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAA 189710 ||||| || || | || | || |||||||| ||| | || || ||||||||||| Sbjct 2411 TTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAACGGCTTCAACTTCAA 2470 Query 189711 TCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCG 189770 ||||| || | ||| ||||||||||| | ||||| ||||| ||| || | ||||| Sbjct 2471 CCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACACTTGGGCTGACATTATTAACCG 2530 Query 189771 TGCTGGTCTTGG 189782 |||| ||||| Sbjct 2531 TGCTAACCTTGG 2542 >seq3157 Length=2513 Score = 453 bits (502), Expect = 1e-122 Identities = 624/870 (72%), Gaps = 2/870 (0%) Strand=Plus/Plus Query 189984 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 190043 ||||||||||| |||| || ||||| || || |||||||| || || || |||||| Sbjct 1637 TGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGGTCT 1696 Query 190044 GGATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACG 190103 || ||| | ||||| || ||||||||||| ||| |||||| ||| |||| || || || Sbjct 1697 GGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACTACA 1756 Query 190104 TTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTT 190163 |||| ||| ||||| || || ||| | || || || | || ||| |||||| Sbjct 1757 TTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAATTTT 1816 Query 190164 CTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 190223 | || ||||| || || || || ||| || ||||||||||||| | | | |||||| Sbjct 1817 TTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTTTGG 1876 Query 190224 GGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTT 190283 ||||||||| | ||||| ||||| | ||| ||| | || || || ||||||||| Sbjct 1877 GGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCTTTT 1936 Query 190284 GTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCA 190343 || || || || | || | ||| ||||| || ||||||||||| |||||| | ||| Sbjct 1937 ACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATTGCA 1996 Query 190344 CGTCTCA-TCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTT 190402 ||| ||| | || |||||||| || || |||||||| || | || || ||| |||| Sbjct 1997 CGT-TCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCTTTT 2055 Query 190403 TGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTT 190462 |||| || || | || ||||| | |||||||| ||||||| || || || || Sbjct 2056 TGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAGTTT 2115 Query 190463 CGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCT 190522 ||||| |||||||| ||||| ||| | | || || || || || ||||||||||| | Sbjct 2116 TGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGACATT 2175 Query 190523 GAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAAT 190582 || || || || |||||||||||||| ||| | | || || ||||| || || ||||| Sbjct 2176 AAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGCAAT 2235 Query 190583 CCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAA 190642 ||||||| || ||||| |||||| | | ||||||||| || || || || || Sbjct 2236 TCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACTTTCCG 2295 Query 190643 AGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTG 190702 || || || | ||||||| ||||| |||||||| | || || || || ||||| || Sbjct 2296 TGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGTTTTTG 2355 Query 190703 GTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTT 190762 ||||||||| |||||||| || || |||||| | ||||| || ||||||||| | || Sbjct 2356 GTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGTTGTT 2415 Query 190763 TGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 190822 ||||| || | ||||| |||| | | || ||| | ||||| | || | || | Sbjct 2416 CGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTAAATTT 2475 Query 190823 TCGTGCTTATGACTTTGTATCCCAAGAGAT 190852 ||||| ||||| || ||||| ||||| || Sbjct 2476 ACGTGCATATGATTTCGTATCACAAGAAAT 2505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634051062174000