Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq197 226 1e-56 >seq197 Length=5048 Score = 226 bits (250), Expect = 1e-56 Identities = 233/303 (77%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || | | | | | |||||||||| |||||||||||||||||||||| | Sbjct 3618 GATGCTGGCGGAAGGCGTCTCATCTGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGT 3677 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAA 500 |||||||| |||||| ||||||| | ||| || ||| ||| || || || Sbjct 3678 GTATGCGAGCTGGTGGGTGGCAAACCCACGAAGCGCAAGGAACCTGACTGG---TGCGAT 3734 Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 560 | ||| |||| |||||||| || ||| | | || |||| ||||| ||| || Sbjct 3735 GGCTCGAGCCTGCAGCATCGACCTCTCTTGAGCTTGTGCGACGGATGAGAGTACGAGTAT 3794 Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 | | ||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 3795 ACACGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGGAAACT 3854 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 |||||||||||||| || || ||| ||||||||||| | || | ||||||||||||| Sbjct 3855 CTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTATAGGGG 3914 Query 681 CGA 683 ||| Sbjct 3915 CGA 3917 Score = 172 bits (190), Expect = 2e-40 Identities = 136/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||| ||||||||||||| | || || ||||||| | ||||| || Sbjct 3265 TCGTCGAGTCGGGTTGCTTGGGAATGCAGCCCCAAGGAGGTGGTAAATCCCATCTAAGGC 3324 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| | | ||||||||||||| ||||||| |||| |||||||||||||||||| Sbjct 3325 TAAATACCGACGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTT 3384 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 || |||||||||||||||| || |||||||||||| ||||||| Sbjct 3385 TGAAAAGAGAGTTAAAAAGTACTTGAAATTGTTGAGAGGGAAG 3427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079981124000