Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq880 253 5e-65 seq879 123 6e-26 >seq880 Length=74269 Score = 253 bits (280), Expect = 5e-65 Identities = 305/410 (74%), Gaps = 5/410 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 73932 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 73873 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||| | | |||||||||||||| | ||| |||| ||| | ||| Sbjct 73872 AAGCGTTATCCGGATTAATTGGGCGTAAAGCGTCTGTAGGTGGTTTATCAAGTCTTTTGT 73813 Query 123 GAAATCCCCGGGCTTAACC-TGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||| | |||| ||||| |||| | ||| | ||| ||| |||| | || Sbjct 73812 CAAAGATCAGGGCCTAACCCTGGGCAG-GCAGAAGAAACTAATAAACTTGAGTTCGGTAG 73754 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 || | |||||||| ||| ||| |||||||||||||| || ||||||||||||| | Sbjct 73753 GGGCAGAGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAAAG 73694 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||||||| | ||||| |||||| || | ||||||||| ||| |||||| Sbjct 73693 GCGAAGGCACTCTGCTGGGCCGTAACTGACACTGAGAGACGAAAGCGAGGGTAGCAAATG 73634 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG--GGATTT 359 ||||||||||||| ||||||| |||| |||||||| ||||| |||||| || || Sbjct 73633 GGATTAGATACCCCAGTAGTCCTCGCCGTAAACGATGGATACTAGGTGTTGGATGGGTTC 73574 Query 360 ACTTCCTT-GGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408 | || || ||| ||||||||||||||||||| ||||||||||| || Sbjct 73573 AAATCATTCAGTACCGTAGCTAACGCGTGAAGTATCCCGCCTGGGGAGTA 73524 >seq879 Length=37587 Score = 123 bits (136), Expect = 6e-26 Identities = 227/328 (69%), Gaps = 21/328 (6%) Strand=Plus/Minus Query 20 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT 79 |||||||| | |||||||||||||||||||||||| || |||||||||| || ||| Sbjct 24366 CCGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCAAGCGTTATTCAAAATG 24307 Query 80 ACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTT-- 137 | ||||||||||||| || ||| ||| | | |||||| || | || Sbjct 24306 ATTGGGCGTAAAGCGCACGTAGGTGGTGATAT------GGTGTGGTAT-----GTATTCA 24258 Query 138 AACC-TGGGAATTGC--ATTTGT---GACTGCACG--ACTAGAGTGTGTCAGAGGGGGGT 189 |||| | || ||| || | ||| || ||| ||| || | ||| | | Sbjct 24257 AACCATAGGTTTTGTCGATAGATACAGACATCATATCACTTGAGGACGTGAAAGGAGCAT 24198 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | | | ||| || |||| || ||| || | ||||||||||| |||||||| Sbjct 24197 GGAATTTCCCAGGAAGCGGTAGAATGTGTTGATCTGGGAAGGAACACCAAACGCGAAGGC 24138 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 || | || | | ||||| | | | ||||||||||||||||||| |||||||| Sbjct 24137 AGTGCTCTTGCACGTACCTGACATTGAGGTGCGAAAGCGTGGGGAGCAAAAGGGATTAGA 24078 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||||||| | |||||| Sbjct 24077 TACCCCTGTAGTCCACGCTGTCAACGAT 24050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289588651520