Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq880 127 3e-27 seq879 98.7 1e-18 >seq880 Length=74269 Score = 127 bits (140), Expect = 3e-27 Identities = 178/248 (72%), Gaps = 20/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || ||| | | ||||| | ||| || Sbjct 70631 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTAC-GACTTTGCGG 70689 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||| ||||||| ||||||||||| || || ||||| || Sbjct 70690 AGACCTATGTTTTTGATAAACAGTCGCCAGGGCCTGGTCACTGCGGCCC----------- 70738 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || | || || ||||||||||||||||||||||||||| ||||||||||| Sbjct 70739 -----TCTTTTAG-AG-AG-GGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAG 70790 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||||||||| |||||| |||||||||||||| Sbjct 70791 TTCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACTAACCCACCTGTGTCGGT 70850 Query 241 TTACGGTA 248 |||||||| Sbjct 70851 TTACGGTA 70858 >seq879 Length=37587 Score = 98.7 bits (108), Expect = 1e-18 Identities = 83/101 (82%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 9 TCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGT 68 |||| ||||||||||| ||||| || ||||| ||| ||||| ||| ||| | ||||| Sbjct 17023 TCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGTGTTACCA-CTTGGCAGAGTCCTGT 16965 Query 69 GTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCA 109 |||||||||||||||||||| ||| |||| || ||| |||| Sbjct 16964 GTTTTTAGTAAACAGTCGCTACCCCCTATACTGTGCCACCA 16924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694394080240