Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq880 443 6e-122 seq879 268 3e-69 >seq880 Length=74269 Score = 443 bits (490), Expect = 6e-122 Identities = 397/494 (80%), Gaps = 22/494 (4%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 73519 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 73460 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||||||||||||||||||| |||||||| || ||| || | Sbjct 73459 TAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATG-TCACTTTTTTCTTGAAA 73401 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGA---CAGGTGATGCATGGTTGTCGTCAGCTC 183 ||| ||||| |||||| |||||| ||||||| |||||||||||| Sbjct 73400 GAGAAAGTTCCC------------GAGTGAACACAGGTGGTGCATGGCTGTCGTCAGCTC 73353 Query 184 GTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCAT 243 ||||| |||||||||||||||||||||||||||||||||||||||| || ||||| || Sbjct 73352 GTGTCTTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTCTGTGTTGCTAT 73293 Query 244 CATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGAC 303 || | | || |||| || |||||||||||| || ||||||||||||| ||| ||| Sbjct 73292 --TTGA-TAGGAAACTC--AGAAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGAC 73238 Query 304 GTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAA 363 ||||| ||| ||||||||||| | |||||||||||||||||||||||| | ||||| Sbjct 73237 GTCAAGTCAGCATGCCCCTTACGCCCTGGGCTACACACGTGCTACAATGGCCGGGACAAA 73178 Query 364 GGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAG 423 | | || | |||||| ||||| || | || ||| | ||| |||||||||||||| Sbjct 73177 GAGATGCAATCTCGCGAGAGCAAGCTAACCTCAAAAACCCGGTCTTAGTTCGGATTGTAG 73118 Query 424 TCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGG 482 ||| |||||| ||| ||||||||||||||||||||||||| || |||| ||| || ||| Sbjct 73117 GCTGAAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCAGGTCAGCCATACTGCGG 73058 Query 483 TGAATACGTTCCCG 496 |||||||||||||| Sbjct 73057 TGAATACGTTCCCG 73044 >seq879 Length=37587 Score = 268 bits (296), Expect = 3e-69 Identities = 354/496 (71%), Gaps = 44/496 (9%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| |||||| || |||||||||||||| ||||||| | | |||||| |||||| ||| Sbjct 23979 TACGATCGCAAGATTAAAACTCAAAGGAATAGACGGGGGCTCACACAAGTGGTGGAACAT 23920 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | ||||| | |||||||||| ||||||||| || |||| Sbjct 23919 GTGGTTTAATTCGATACTACGCGCATAACCTTACCAGTTCTTGACAT-----GATCCCTA 23865 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||||| ||||||| ||||||||| Sbjct 23864 TGGA-----------------------------TCACAGGTGTTGCATGGCTGTCGTCAG 23834 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||| |||| ||||||| |||| | || |||||||| |||||| || |||| Sbjct 23833 CTCGTGTGGTGACATGTTGGATTAATTTCCCGAACGAGCGAAACCCT---GCCACATTGC 23777 Query 241 C--ATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 || | || | || | || ||| ||| |||| | || ||||| ||| ||| Sbjct 23776 ACTATACACACGTATGTCAAT----GTGGACCGCCAGTGAGAGACTGGAGGCAGGATGGG 23721 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| || ||||| ||||||||| ||||||||||||||| |||||||| Sbjct 23720 ATGACGTCAAGTCCTCATGACCCTTATGAACTGGGCTACACACGTGTTACAATGGTGTGA 23661 Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||| | ||| | |||| |||| ||| |||| | ||| |||||| ||||| Sbjct 23660 ACAATACGTAGCAAGACCGAAAGGTGGAGCCAATCGCC-AAATCACACCTCAGTACGGAT 23602 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCT 478 || |||||||||||||| || |||| |||||| ||||||||||| |||||||| || Sbjct 23601 TGGTGTCTGCAACTCGACACCATCAAGCCGGAATCACTAGTAATCGTGGATCAGCACGCC 23542 Query 479 ACGGTGAATACGTTCC 494 |||||||||| || || Sbjct 23541 ACGGTGAATATGTACC 23526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503986764800