Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq880 212 1e-52 seq879 77.0 6e-12 >seq880 Length=74269 Score = 212 bits (234), Expect = 1e-52 Identities = 183/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| |||| |||||||||||||||||||||| ||||| ||| |||||||||| | Sbjct 70259 GACAGTTTCAGGTGGGCAGTTTGACTGGGGCGGTCACCTCCTAAAAGGTAACGGAGGTGT 70200 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| | ||||||| |||| ||||| || || | |||| ||||||| ||||| | | Sbjct 70199 GCAAAGGTTCCCTCAGGCTGGACGGAAATCAGCCGTAGAGTGTAAAGGCAGAAGGGAGCT 70140 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 ||||||| | ||| |||||| ||||||| |||||| ||| |||| ||||||| |||| | Sbjct 70139 TGACTGCAAGACCTACAAGTCGAGCAGGGGCGAAAGCCGGCCTTAGTGATCCGACGGTTC 70080 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||||| |||||||||| ||||||||||| ||| || |||||| Sbjct 70079 CGTGTGGAAGGGCCGTCGCTAAACGGATAAAAGTTACTCTAGGGATA 70033 >seq879 Length=37587 Score = 77.0 bits (84), Expect = 6e-12 Identities = 132/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 152 CCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAA-CCATGCGCAC 210 || ||||||||||||| ||| ||||| || ||| | ||| ||||| ||||| | | Sbjct 19197 CCTAAAGAGTAACGGAAGCGTGCAAAGGTAAGTTCACATGGGACGGAAACCCATG-GTAG 19255 Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 || | || || | | | || ||||||| | || || ||| ||||| |||||||||| Sbjct 19256 AGCGTAATGGTATATGCTTGCCTGACTGCAAGACTTACAGGTCGAGCAGAGACGAAAGTC 19315 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || | || ||| |||| || | |||| ||| ||| |||||| |||| ||| Sbjct 19316 GGCCATAGTGACCCGGGAGTACCACGTGGATGGGCTCTCGAGTAACGGATCAAAGGTACG 19375 Query 331 CTGGGGATA 339 || |||||| Sbjct 19376 CTAGGGATA 19384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982391354880